miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5270 5' -57.2 NC_001798.1 + 43451 0.66 0.866273
Target:  5'- gACGaGUCUGCGAccccgcaguacgcggGGGCGggcgugAGGGCCgCCg -3'
miRNA:   3'- -UGC-CAGACGCU---------------CCCGU------UCUUGGaGGa -5'
5270 5' -57.2 NC_001798.1 + 117504 0.66 0.863273
Target:  5'- cGCGGUCgugGCGGGaaaccGGCuGGGGCCggcCCa -3'
miRNA:   3'- -UGCCAGa--CGCUC-----CCGuUCUUGGa--GGa -5'
5270 5' -57.2 NC_001798.1 + 50719 0.66 0.847786
Target:  5'- -gGGUCUGCGuGGGGaCGAGGcccACCcCCc -3'
miRNA:   3'- ugCCAGACGC-UCCC-GUUCU---UGGaGGa -5'
5270 5' -57.2 NC_001798.1 + 5045 0.66 0.847786
Target:  5'- -gGGUgUGCGGGGG-GGGggUCUUCUu -3'
miRNA:   3'- ugCCAgACGCUCCCgUUCuuGGAGGA- -5'
5270 5' -57.2 NC_001798.1 + 81995 0.66 0.839748
Target:  5'- aGCGGUCgucccCGGGGGCGAccGCCgCCg -3'
miRNA:   3'- -UGCCAGac---GCUCCCGUUcuUGGaGGa -5'
5270 5' -57.2 NC_001798.1 + 9322 0.66 0.839748
Target:  5'- gUGGUgaGCGGGcGGCGAGAuuuacGCC-CCUc -3'
miRNA:   3'- uGCCAgaCGCUC-CCGUUCU-----UGGaGGA- -5'
5270 5' -57.2 NC_001798.1 + 85832 0.66 0.831523
Target:  5'- gGCGGgggCggGCGGGGGCucgGGAAcgcaacCCUCCc -3'
miRNA:   3'- -UGCCa--Ga-CGCUCCCGu--UCUU------GGAGGa -5'
5270 5' -57.2 NC_001798.1 + 31382 0.67 0.823118
Target:  5'- cGCGG-CgGCgGAGGGCAGGAcGCCcCCc -3'
miRNA:   3'- -UGCCaGaCG-CUCCCGUUCU-UGGaGGa -5'
5270 5' -57.2 NC_001798.1 + 105384 0.67 0.81454
Target:  5'- gGCGGcCUG-GAGGGCGgcguucuccAGGGCCgCCg -3'
miRNA:   3'- -UGCCaGACgCUCCCGU---------UCUUGGaGGa -5'
5270 5' -57.2 NC_001798.1 + 83579 0.67 0.805798
Target:  5'- gGCGGUgaaaCUGCG-GGGCGgccaucGGGACCUUg- -3'
miRNA:   3'- -UGCCA----GACGCuCCCGU------UCUUGGAGga -5'
5270 5' -57.2 NC_001798.1 + 48628 0.67 0.7969
Target:  5'- gGCGGgagggGCGggaGGGGCGGGAggaaggacacGCCUCCc -3'
miRNA:   3'- -UGCCaga--CGC---UCCCGUUCU----------UGGAGGa -5'
5270 5' -57.2 NC_001798.1 + 102389 0.67 0.785113
Target:  5'- gGCGGUCggcgGCGAuggcccccaccagcGcGGCGAucuGGGCCUCCa -3'
miRNA:   3'- -UGCCAGa---CGCU--------------C-CCGUU---CUUGGAGGa -5'
5270 5' -57.2 NC_001798.1 + 2375 0.68 0.778669
Target:  5'- cACGGcCcGCGGGGcGCAGuaGGCCUCCa -3'
miRNA:   3'- -UGCCaGaCGCUCC-CGUUc-UUGGAGGa -5'
5270 5' -57.2 NC_001798.1 + 81041 0.68 0.758968
Target:  5'- uGCGGUUUGU--GGGCAgcgaggccaccgaGGAGCUUCCg -3'
miRNA:   3'- -UGCCAGACGcuCCCGU-------------UCUUGGAGGa -5'
5270 5' -57.2 NC_001798.1 + 23252 0.68 0.740717
Target:  5'- cGCGGUCcGCG-GGGCGuacccGGACC-CCa -3'
miRNA:   3'- -UGCCAGaCGCuCCCGUu----CUUGGaGGa -5'
5270 5' -57.2 NC_001798.1 + 4077 0.69 0.721139
Target:  5'- cGCGGUCgccGCGGGGGUccGGGCCg--- -3'
miRNA:   3'- -UGCCAGa--CGCUCCCGuuCUUGGagga -5'
5270 5' -57.2 NC_001798.1 + 102029 0.69 0.701259
Target:  5'- aGCGGg--GUGGuuGGGCGGGggUCUCCg -3'
miRNA:   3'- -UGCCagaCGCU--CCCGUUCuuGGAGGa -5'
5270 5' -57.2 NC_001798.1 + 124432 0.69 0.671027
Target:  5'- cGCGGUCgcGCGGGccguGGCcAGAGCCUCa- -3'
miRNA:   3'- -UGCCAGa-CGCUC----CCGuUCUUGGAGga -5'
5270 5' -57.2 NC_001798.1 + 136141 0.7 0.640512
Target:  5'- gUGGg--GCGAGGGCGGGAGCUUUg- -3'
miRNA:   3'- uGCCagaCGCUCCCGUUCUUGGAGga -5'
5270 5' -57.2 NC_001798.1 + 16077 0.7 0.640512
Target:  5'- gGCGGgcgUCUGUGGGGGC-AGAcaGCgCUCCc -3'
miRNA:   3'- -UGCC---AGACGCUCCCGuUCU--UG-GAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.