miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5271 3' -66.7 NC_001798.1 + 98600 0.66 0.495967
Target:  5'- cCCgGCGGCcCCG-GcGGCCCCCCGc-- -3'
miRNA:   3'- -GGgUGCCGcGGCaC-CUGGGGGGCcca -5'
5271 3' -66.7 NC_001798.1 + 90652 0.66 0.495967
Target:  5'- gUCCGCGGagauGCCGcGGAacgacgCCCCCGGcGa -3'
miRNA:   3'- -GGGUGCCg---CGGCaCCUg-----GGGGGCC-Ca -5'
5271 3' -66.7 NC_001798.1 + 34553 0.66 0.495967
Target:  5'- cCCCcCGGaGCC-UGGGUCCCCCGGcGg -3'
miRNA:   3'- -GGGuGCCgCGGcACCUGGGGGGCC-Ca -5'
5271 3' -66.7 NC_001798.1 + 23804 0.66 0.495967
Target:  5'- gCCGUGGC-CCG-GGGCcggccccccgCCCCCGGGg -3'
miRNA:   3'- gGGUGCCGcGGCaCCUG----------GGGGGCCCa -5'
5271 3' -66.7 NC_001798.1 + 25305 0.66 0.495967
Target:  5'- gCCCuCGGcCGCCGcccUGGaggccuacugcGCCCCgCGGGc -3'
miRNA:   3'- -GGGuGCC-GCGGC---ACC-----------UGGGGgGCCCa -5'
5271 3' -66.7 NC_001798.1 + 66827 0.66 0.495967
Target:  5'- gCCCGgccCGGUGCCG-GcGCCCaggCCGGGg -3'
miRNA:   3'- -GGGU---GCCGCGGCaCcUGGGg--GGCCCa -5'
5271 3' -66.7 NC_001798.1 + 152544 0.66 0.495084
Target:  5'- cCCCucucgggGCGGCcCCGUccccggGGACCaaCCGGGUg -3'
miRNA:   3'- -GGG-------UGCCGcGGCA------CCUGGggGGCCCA- -5'
5271 3' -66.7 NC_001798.1 + 3253 0.66 0.487174
Target:  5'- cCCCGCGGCGCCGU--AgCCggCGGGc -3'
miRNA:   3'- -GGGUGCCGCGGCAccUgGGggGCCCa -5'
5271 3' -66.7 NC_001798.1 + 135510 0.66 0.487174
Target:  5'- gCgCACGGCGCgauccaGGACgCCCgCCGGGc -3'
miRNA:   3'- -GgGUGCCGCGgca---CCUG-GGG-GGCCCa -5'
5271 3' -66.7 NC_001798.1 + 129343 0.66 0.487174
Target:  5'- gCCGCGGagcgccCGCCGggccuggcGGGgCCCCCGGa- -3'
miRNA:   3'- gGGUGCC------GCGGCa-------CCUgGGGGGCCca -5'
5271 3' -66.7 NC_001798.1 + 21448 0.66 0.481064
Target:  5'- cCCCcCGGC-CCGUccccccgucccccGcccguccccccggccGGCCCCCCGGGUc -3'
miRNA:   3'- -GGGuGCCGcGGCA-------------C---------------CUGGGGGGCCCA- -5'
5271 3' -66.7 NC_001798.1 + 126921 0.66 0.477589
Target:  5'- cCUgGCGcGCGCCGUGGugUUCCugaacaccaggugCGGGa -3'
miRNA:   3'- -GGgUGC-CGCGGCACCugGGGG-------------GCCCa -5'
5271 3' -66.7 NC_001798.1 + 139338 0.66 0.469816
Target:  5'- gCCCGCGcGCGCUGUGcGGCCauggcggcgUCCggCGGGg -3'
miRNA:   3'- -GGGUGC-CGCGGCAC-CUGG---------GGG--GCCCa -5'
5271 3' -66.7 NC_001798.1 + 73330 0.66 0.469816
Target:  5'- gCCCGC-GCGCCGUcGACgCgCCCGGcGg -3'
miRNA:   3'- -GGGUGcCGCGGCAcCUGgG-GGGCC-Ca -5'
5271 3' -66.7 NC_001798.1 + 134654 0.66 0.469816
Target:  5'- gCCUGCGGCcCCGcGGACaCCCgcagCGGGUc -3'
miRNA:   3'- -GGGUGCCGcGGCaCCUG-GGGg---GCCCA- -5'
5271 3' -66.7 NC_001798.1 + 109558 0.66 0.461256
Target:  5'- gCCUAUGGCGCgGUGG-CCCCgagCGcGGc -3'
miRNA:   3'- -GGGUGCCGCGgCACCuGGGGg--GC-CCa -5'
5271 3' -66.7 NC_001798.1 + 49313 0.66 0.461256
Target:  5'- gCCCACGGCGaCGUGGcguuCCCCaCCc--- -3'
miRNA:   3'- -GGGUGCCGCgGCACCu---GGGG-GGccca -5'
5271 3' -66.7 NC_001798.1 + 123935 0.66 0.452779
Target:  5'- gCCCugGGUccggggGCCugGUGGcACCuCCCCGGcGg -3'
miRNA:   3'- -GGGugCCG------CGG--CACC-UGG-GGGGCC-Ca -5'
5271 3' -66.7 NC_001798.1 + 16652 0.66 0.452779
Target:  5'- gCC-CGGCGuCCGcGGaACCCaagggCCCGGGa -3'
miRNA:   3'- gGGuGCCGC-GGCaCC-UGGG-----GGGCCCa -5'
5271 3' -66.7 NC_001798.1 + 90997 0.67 0.444388
Target:  5'- cCCCACaGGCGCaagcgaCGcGGccagaaGCCCUCCGGGc -3'
miRNA:   3'- -GGGUG-CCGCG------GCaCC------UGGGGGGCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.