miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5271 5' -54.8 NC_001798.1 + 126727 0.66 0.947937
Target:  5'- -gGGgGAGUGCGcUCUUCgcGCGgCCGCa -3'
miRNA:   3'- agUUgUUCGCGC-AGAAGa-CGC-GGCGc -5'
5271 5' -54.8 NC_001798.1 + 79945 0.66 0.947937
Target:  5'- cCAGCuGGGCuggGCGUCcggagCggcgGCGCCGCGu -3'
miRNA:   3'- aGUUG-UUCG---CGCAGaa---Ga---CGCGGCGC- -5'
5271 5' -54.8 NC_001798.1 + 134936 0.66 0.947937
Target:  5'- gUCGGCGcgugaccuGGUGCGgg----GCGCCGCGg -3'
miRNA:   3'- -AGUUGU--------UCGCGCagaagaCGCGGCGC- -5'
5271 5' -54.8 NC_001798.1 + 126838 0.66 0.946632
Target:  5'- cUCGGCAAGUacaucggccagcugGCGUCc-CUGCG-CGCGa -3'
miRNA:   3'- -AGUUGUUCG--------------CGCAGaaGACGCgGCGC- -5'
5271 5' -54.8 NC_001798.1 + 77771 0.66 0.938827
Target:  5'- uUCGAC--GUG-GUCgagCUGCGCCGCc -3'
miRNA:   3'- -AGUUGuuCGCgCAGaa-GACGCGGCGc -5'
5271 5' -54.8 NC_001798.1 + 122436 0.66 0.933911
Target:  5'- cCGcCGAGCGCGUCg--UGCGCCc-- -3'
miRNA:   3'- aGUuGUUCGCGCAGaagACGCGGcgc -5'
5271 5' -54.8 NC_001798.1 + 105252 0.66 0.933911
Target:  5'- cUCGGCGucccGCGCGgcauccgccUCUUCggccgcgGcCGCCGCGg -3'
miRNA:   3'- -AGUUGUu---CGCGC---------AGAAGa------C-GCGGCGC- -5'
5271 5' -54.8 NC_001798.1 + 27039 0.66 0.928753
Target:  5'- -gGGCGGGCGgcaCGUCUcCcGCGCcCGCGg -3'
miRNA:   3'- agUUGUUCGC---GCAGAaGaCGCG-GCGC- -5'
5271 5' -54.8 NC_001798.1 + 64622 0.66 0.928753
Target:  5'- uUCAGCAagAGCGUGUUggg-GCGCaGCGu -3'
miRNA:   3'- -AGUUGU--UCGCGCAGaagaCGCGgCGC- -5'
5271 5' -54.8 NC_001798.1 + 3461 0.66 0.928753
Target:  5'- gUCAGCAGGaaGCc-CUUCUGCG-CGCGg -3'
miRNA:   3'- -AGUUGUUCg-CGcaGAAGACGCgGCGC- -5'
5271 5' -54.8 NC_001798.1 + 130773 0.66 0.928224
Target:  5'- cCGACGauacgauGGUGCGUCg---GCGCCGgGu -3'
miRNA:   3'- aGUUGU-------UCGCGCAGaagaCGCGGCgC- -5'
5271 5' -54.8 NC_001798.1 + 104976 0.66 0.923351
Target:  5'- -gGACAuGCGCccGUCUcgaaagUCgGCGCUGCGg -3'
miRNA:   3'- agUUGUuCGCG--CAGA------AGaCGCGGCGC- -5'
5271 5' -54.8 NC_001798.1 + 1640 0.66 0.922242
Target:  5'- gCAGCGgcGGCGCGUCgggguacagGCGCgCGUGc -3'
miRNA:   3'- aGUUGU--UCGCGCAGaaga-----CGCG-GCGC- -5'
5271 5' -54.8 NC_001798.1 + 111338 0.67 0.913611
Target:  5'- --cACGAGCGCGgggaagggggacaUGCGCCGCu -3'
miRNA:   3'- aguUGUUCGCGCagaag--------ACGCGGCGc -5'
5271 5' -54.8 NC_001798.1 + 78851 0.67 0.901901
Target:  5'- gCGGCAcgccggccgccugggGGCGC-UCUUUgauacucgGCGCCGCGu -3'
miRNA:   3'- aGUUGU---------------UCGCGcAGAAGa-------CGCGGCGC- -5'
5271 5' -54.8 NC_001798.1 + 74036 0.67 0.899327
Target:  5'- cCGGCGGcGCGCGgCggcCUGCGuuGCGu -3'
miRNA:   3'- aGUUGUU-CGCGCaGaa-GACGCggCGC- -5'
5271 5' -54.8 NC_001798.1 + 42334 0.67 0.899327
Target:  5'- aCGGCAAGCGCagg--CUGUGgCCGUGg -3'
miRNA:   3'- aGUUGUUCGCGcagaaGACGC-GGCGC- -5'
5271 5' -54.8 NC_001798.1 + 2604 0.67 0.892725
Target:  5'- uUCGGgGGGCGCGgg----GCGCCGCc -3'
miRNA:   3'- -AGUUgUUCGCGCagaagaCGCGGCGc -5'
5271 5' -54.8 NC_001798.1 + 4596 0.67 0.892725
Target:  5'- -aGGCGAGCGgGccgcuUCUUCUugcGCGCCGUc -3'
miRNA:   3'- agUUGUUCGCgC-----AGAAGA---CGCGGCGc -5'
5271 5' -54.8 NC_001798.1 + 3429 0.68 0.885891
Target:  5'- cCAGCAggGGCGCGUag---GCGCgGCGc -3'
miRNA:   3'- aGUUGU--UCGCGCAgaagaCGCGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.