miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5273 5' -59 NC_001798.1 + 43009 0.66 0.794748
Target:  5'- gACGGCcAGgccgCCCGGGGgga-GCGCGGg -3'
miRNA:   3'- -UGCUGcUCa---GGGCCCUauggCGCGCU- -5'
5273 5' -59 NC_001798.1 + 85675 0.66 0.794748
Target:  5'- gACGGCGGGgugCCCGGGc-GCCaCGCc- -3'
miRNA:   3'- -UGCUGCUCa--GGGCCCuaUGGcGCGcu -5'
5273 5' -59 NC_001798.1 + 92690 0.67 0.785944
Target:  5'- cACGGaGGGcUUCCGGGAgGCCGUGUGc -3'
miRNA:   3'- -UGCUgCUC-AGGGCCCUaUGGCGCGCu -5'
5273 5' -59 NC_001798.1 + 85291 0.67 0.785944
Target:  5'- -gGGCGGGggCCGGGGU-CCGCccGCGGc -3'
miRNA:   3'- ugCUGCUCagGGCCCUAuGGCG--CGCU- -5'
5273 5' -59 NC_001798.1 + 66171 0.67 0.785944
Target:  5'- uCGACGAGcgugUUCGGGGUGCUGUG-GAu -3'
miRNA:   3'- uGCUGCUCa---GGGCCCUAUGGCGCgCU- -5'
5273 5' -59 NC_001798.1 + 34731 0.67 0.785944
Target:  5'- -gGGCGAGggucgggCCCGGGA-GCgGgGCGGc -3'
miRNA:   3'- ugCUGCUCa------GGGCCCUaUGgCgCGCU- -5'
5273 5' -59 NC_001798.1 + 88012 0.67 0.777011
Target:  5'- gACGGCGucUCCCGGGGgcgcuugGCCG-GgGAg -3'
miRNA:   3'- -UGCUGCucAGGGCCCUa------UGGCgCgCU- -5'
5273 5' -59 NC_001798.1 + 150618 0.67 0.777011
Target:  5'- uAUGGgGGGcUCCUGGG---CCGCGCGGg -3'
miRNA:   3'- -UGCUgCUC-AGGGCCCuauGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 44894 0.67 0.777011
Target:  5'- -gGAUGGcGUCCCugcucGGGUGCUGUGCGGu -3'
miRNA:   3'- ugCUGCU-CAGGGc----CCUAUGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 88080 0.67 0.777011
Target:  5'- gGCGGCGGcGUCUagcuCGcGGAgggcggccaGCCGCGCGAc -3'
miRNA:   3'- -UGCUGCU-CAGG----GC-CCUa--------UGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 49770 0.67 0.767957
Target:  5'- uGCGGgGAGuUCCCGuGGAggcccggcgACUGCGgGAg -3'
miRNA:   3'- -UGCUgCUC-AGGGC-CCUa--------UGGCGCgCU- -5'
5273 5' -59 NC_001798.1 + 46569 0.67 0.767957
Target:  5'- uCGACccgGAGggcCCCGGGGgcaaacCCGCGCGu -3'
miRNA:   3'- uGCUG---CUCa--GGGCCCUau----GGCGCGCu -5'
5273 5' -59 NC_001798.1 + 99743 0.67 0.767957
Target:  5'- gGCGACugcaUCggCCGGGAUGCC-CGCGAg -3'
miRNA:   3'- -UGCUGcuc-AG--GGCCCUAUGGcGCGCU- -5'
5273 5' -59 NC_001798.1 + 135483 0.67 0.767957
Target:  5'- aACGugGAc-CCCGGGGacgcggacGCCGCGCa- -3'
miRNA:   3'- -UGCugCUcaGGGCCCUa-------UGGCGCGcu -5'
5273 5' -59 NC_001798.1 + 22957 0.67 0.75879
Target:  5'- cCGACGAggcggccccggcGUCCgGGGAgGCCGuCGaCGAg -3'
miRNA:   3'- uGCUGCU------------CAGGgCCCUaUGGC-GC-GCU- -5'
5273 5' -59 NC_001798.1 + 52958 0.67 0.75879
Target:  5'- gGCGcACGuGU-CCGGGAgg-CGCGCGAc -3'
miRNA:   3'- -UGC-UGCuCAgGGCCCUaugGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 24600 0.67 0.75879
Target:  5'- cCGugGAGUgCCUGGccgccUGCCGCGgGAu -3'
miRNA:   3'- uGCugCUCA-GGGCCcu---AUGGCGCgCU- -5'
5273 5' -59 NC_001798.1 + 21745 0.67 0.75879
Target:  5'- uGCGGCGGcgaCCGGGAcGCCggcccuuuauguGCGCGAg -3'
miRNA:   3'- -UGCUGCUcagGGCCCUaUGG------------CGCGCU- -5'
5273 5' -59 NC_001798.1 + 59773 0.67 0.74015
Target:  5'- cCGGCG-GUUCCGGGA-ACgCGgGCGGu -3'
miRNA:   3'- uGCUGCuCAGGGCCCUaUG-GCgCGCU- -5'
5273 5' -59 NC_001798.1 + 28357 0.67 0.737323
Target:  5'- gGCGGCGGccccccgcguccccgCCCGcGGAcgcGCCGCGCGGg -3'
miRNA:   3'- -UGCUGCUca-------------GGGC-CCUa--UGGCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.