miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5276 3' -56 NC_001798.1 + 97631 0.66 0.927282
Target:  5'- cGCGACGcgggcCGCCGcGGACGUgCgggagCGCc -3'
miRNA:   3'- -CGCUGCuu---GCGGC-CUUGCAgGa----GCGu -5'
5276 3' -56 NC_001798.1 + 20871 0.66 0.927282
Target:  5'- cCGACGAGCuggggaggaCGGGGCGUCUgCGCu -3'
miRNA:   3'- cGCUGCUUGcg-------GCCUUGCAGGaGCGu -5'
5276 3' -56 NC_001798.1 + 51257 0.66 0.927282
Target:  5'- --cGCGGACGCCGGGACagcgCCaucaCGCGg -3'
miRNA:   3'- cgcUGCUUGCGGCCUUGca--GGa---GCGU- -5'
5276 3' -56 NC_001798.1 + 2973 0.66 0.927282
Target:  5'- uCGGCGuGCGgCGGGGCGgccggCC-CGCGg -3'
miRNA:   3'- cGCUGCuUGCgGCCUUGCa----GGaGCGU- -5'
5276 3' -56 NC_001798.1 + 18138 0.67 0.898321
Target:  5'- cGCGGCGuccACGauGGggUaGUCCUCGUc -3'
miRNA:   3'- -CGCUGCu--UGCggCCuuG-CAGGAGCGu -5'
5276 3' -56 NC_001798.1 + 150863 0.67 0.898321
Target:  5'- cGCGGCGG--GCUGGGAgGUUC-CGCGg -3'
miRNA:   3'- -CGCUGCUugCGGCCUUgCAGGaGCGU- -5'
5276 3' -56 NC_001798.1 + 14001 0.67 0.898321
Target:  5'- uUGGgGAuCGCCGGAuuauuuCGUCCUuccCGCAc -3'
miRNA:   3'- cGCUgCUuGCGGCCUu-----GCAGGA---GCGU- -5'
5276 3' -56 NC_001798.1 + 63598 0.67 0.891189
Target:  5'- gGCGGCGAACGaggCGGcaaaaaaGACGcCCUCGa- -3'
miRNA:   3'- -CGCUGCUUGCg--GCC-------UUGCaGGAGCgu -5'
5276 3' -56 NC_001798.1 + 47790 0.67 0.878245
Target:  5'- cGCG-CGAccGCGUCGuucGGCGUCCgUCGCGg -3'
miRNA:   3'- -CGCuGCU--UGCGGCc--UUGCAGG-AGCGU- -5'
5276 3' -56 NC_001798.1 + 151213 0.67 0.878245
Target:  5'- aGCGACaggGAGCGCgGGGcCGUCCgCGgGu -3'
miRNA:   3'- -CGCUG---CUUGCGgCCUuGCAGGaGCgU- -5'
5276 3' -56 NC_001798.1 + 149300 0.67 0.878245
Target:  5'- cGCGAcCGGAgGCCGuGGAaGUCCagCGCGc -3'
miRNA:   3'- -CGCU-GCUUgCGGC-CUUgCAGGa-GCGU- -5'
5276 3' -56 NC_001798.1 + 26445 0.67 0.898321
Target:  5'- cGCGACGAcgcggACGCgGGccCGcCCcCGCAg -3'
miRNA:   3'- -CGCUGCU-----UGCGgCCuuGCaGGaGCGU- -5'
5276 3' -56 NC_001798.1 + 97545 0.67 0.90457
Target:  5'- -aGGCGuGGCGCgGGGACG-CC-CGCGa -3'
miRNA:   3'- cgCUGC-UUGCGgCCUUGCaGGaGCGU- -5'
5276 3' -56 NC_001798.1 + 4212 0.67 0.90457
Target:  5'- uGCGGCGcuggcgggGGCGCgGGcGGCGUCgUCGUc -3'
miRNA:   3'- -CGCUGC--------UUGCGgCC-UUGCAGgAGCGu -5'
5276 3' -56 NC_001798.1 + 4350 0.67 0.90457
Target:  5'- gGCGGcCGAGCGCCGGcggggGGCGcgCCg-GCGg -3'
miRNA:   3'- -CGCU-GCUUGCGGCC-----UUGCa-GGagCGU- -5'
5276 3' -56 NC_001798.1 + 20469 0.67 0.90457
Target:  5'- gGCGAgcaGAGCGCCGGuGCG-CgUgCGCGa -3'
miRNA:   3'- -CGCUg--CUUGCGGCCuUGCaGgA-GCGU- -5'
5276 3' -56 NC_001798.1 + 24415 0.67 0.90457
Target:  5'- gGCGGCGGcguCGCCGGccGACGagCgCGCGg -3'
miRNA:   3'- -CGCUGCUu--GCGGCC--UUGCagGaGCGU- -5'
5276 3' -56 NC_001798.1 + 96983 0.67 0.90457
Target:  5'- cGCGGCGGGCGgCGGGGCcagggCCggccCGCc -3'
miRNA:   3'- -CGCUGCUUGCgGCCUUGca---GGa---GCGu -5'
5276 3' -56 NC_001798.1 + 113822 0.67 0.90457
Target:  5'- gGgGACagaGGACGCCGGccgGUCCUCGg- -3'
miRNA:   3'- -CgCUG---CUUGCGGCCuugCAGGAGCgu -5'
5276 3' -56 NC_001798.1 + 141094 0.67 0.878245
Target:  5'- aCGGCaGAacuccugucgcuACGCCGGGACG-CCgccggCGCAu -3'
miRNA:   3'- cGCUG-CU------------UGCGGCCUUGCaGGa----GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.