miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5276 3' -56 NC_001798.1 + 4212 0.67 0.90457
Target:  5'- uGCGGCGcuggcgggGGCGCgGGcGGCGUCgUCGUc -3'
miRNA:   3'- -CGCUGC--------UUGCGgCC-UUGCAGgAGCGu -5'
5276 3' -56 NC_001798.1 + 97545 0.67 0.90457
Target:  5'- -aGGCGuGGCGCgGGGACG-CC-CGCGa -3'
miRNA:   3'- cgCUGC-UUGCGgCCUUGCaGGaGCGU- -5'
5276 3' -56 NC_001798.1 + 50682 0.68 0.848533
Target:  5'- -aGGCaGGCGCgCGGGuccCGUUCUCGCAu -3'
miRNA:   3'- cgCUGcUUGCG-GCCUu--GCAGGAGCGU- -5'
5276 3' -56 NC_001798.1 + 37987 0.68 0.832514
Target:  5'- cGCGGgGGAUGCacCGGAGaCGUCCUUGa- -3'
miRNA:   3'- -CGCUgCUUGCG--GCCUU-GCAGGAGCgu -5'
5276 3' -56 NC_001798.1 + 102751 0.68 0.832514
Target:  5'- aCGGCGAccugcgGCGCgGGAACG--CUCGCGg -3'
miRNA:   3'- cGCUGCU------UGCGgCCUUGCagGAGCGU- -5'
5276 3' -56 NC_001798.1 + 56528 0.68 0.832514
Target:  5'- cGUGGCGgu-GCCGGGGCG-CC-CGCAc -3'
miRNA:   3'- -CGCUGCuugCGGCCUUGCaGGaGCGU- -5'
5276 3' -56 NC_001798.1 + 144515 0.68 0.832514
Target:  5'- -aGGCGAguAUGCCGGcgcCGaCCUCGCGu -3'
miRNA:   3'- cgCUGCU--UGCGGCCuu-GCaGGAGCGU- -5'
5276 3' -56 NC_001798.1 + 150373 0.68 0.831694
Target:  5'- aCGGCGGGCgGCgCGGGcccggccGCGUCCgcgcUCGCAg -3'
miRNA:   3'- cGCUGCUUG-CG-GCCU-------UGCAGG----AGCGU- -5'
5276 3' -56 NC_001798.1 + 4119 0.68 0.829224
Target:  5'- -gGGCGGGCucgGCCGGGGCGccgcccccggggcCCUCGCGg -3'
miRNA:   3'- cgCUGCUUG---CGGCCUUGCa------------GGAGCGU- -5'
5276 3' -56 NC_001798.1 + 23675 0.68 0.848533
Target:  5'- cGCGGCGGugGCCGGccgcGACG-CCacgggcCGCu -3'
miRNA:   3'- -CGCUGCUugCGGCC----UUGCaGGa-----GCGu -5'
5276 3' -56 NC_001798.1 + 134365 0.68 0.848533
Target:  5'- uCGugGGGCccGCCGGc-CGcUCCUCGCGc -3'
miRNA:   3'- cGCugCUUG--CGGCCuuGC-AGGAGCGU- -5'
5276 3' -56 NC_001798.1 + 24543 0.68 0.855497
Target:  5'- aCGACGAcgGCGCCGGcggugguGGCGgcggCCggcgCGCGg -3'
miRNA:   3'- cGCUGCU--UGCGGCC-------UUGCa---GGa---GCGU- -5'
5276 3' -56 NC_001798.1 + 104326 0.68 0.871122
Target:  5'- aGCGAUGGccucCGCCGGGACGgcUCC-CGgGa -3'
miRNA:   3'- -CGCUGCUu---GCGGCCUUGC--AGGaGCgU- -5'
5276 3' -56 NC_001798.1 + 2628 0.68 0.871122
Target:  5'- gGCGGCGcccugGCCGGGGCGgggCuCUUGCGc -3'
miRNA:   3'- -CGCUGCuug--CGGCCUUGCa--G-GAGCGU- -5'
5276 3' -56 NC_001798.1 + 8853 0.68 0.871122
Target:  5'- uCGGCGG--GCCGGGAgGUCaUCGCGg -3'
miRNA:   3'- cGCUGCUugCGGCCUUgCAGgAGCGU- -5'
5276 3' -56 NC_001798.1 + 102649 0.68 0.863793
Target:  5'- gGCGGCGGAgggGCCGGGGCGcCCgauGCc -3'
miRNA:   3'- -CGCUGCUUg--CGGCCUUGCaGGag-CGu -5'
5276 3' -56 NC_001798.1 + 5922 0.68 0.863793
Target:  5'- -gGACGGGgGgCGGGcCGuUCCUCGCGc -3'
miRNA:   3'- cgCUGCUUgCgGCCUuGC-AGGAGCGU- -5'
5276 3' -56 NC_001798.1 + 2249 0.68 0.863793
Target:  5'- gGCGGCGGGCGCgccgccggggggCGGGGCGg---CGCAg -3'
miRNA:   3'- -CGCUGCUUGCG------------GCCUUGCaggaGCGU- -5'
5276 3' -56 NC_001798.1 + 128612 0.68 0.856261
Target:  5'- aCGACGccGACGCCGGG-CG-CUUCGUc -3'
miRNA:   3'- cGCUGC--UUGCGGCCUuGCaGGAGCGu -5'
5276 3' -56 NC_001798.1 + 150459 0.69 0.81579
Target:  5'- gGCGACGGccGCGCgGGGGCGcgCggCGCGc -3'
miRNA:   3'- -CGCUGCU--UGCGgCCUUGCa-GgaGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.