Results 81 - 100 of 119 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5276 | 3' | -56 | NC_001798.1 | + | 46028 | 0.7 | 0.780468 |
Target: 5'- cGCGACGAGCaGCUGG-GCGaCCUUGg- -3' miRNA: 3'- -CGCUGCUUG-CGGCCuUGCaGGAGCgu -5' |
|||||||
5276 | 3' | -56 | NC_001798.1 | + | 91115 | 0.7 | 0.771295 |
Target: 5'- uGCGcUGcucCGCgGGGGCGUCCUCGUc -3' miRNA: 3'- -CGCuGCuu-GCGgCCUUGCAGGAGCGu -5' |
|||||||
5276 | 3' | -56 | NC_001798.1 | + | 16619 | 0.7 | 0.771295 |
Target: 5'- cGUGACGGacgacGCGCCGGGGCaggUCUUGCc -3' miRNA: 3'- -CGCUGCU-----UGCGGCCUUGca-GGAGCGu -5' |
|||||||
5276 | 3' | -56 | NC_001798.1 | + | 4732 | 0.7 | 0.771295 |
Target: 5'- uCGACGGccuccccggACGCCGGGGcCG-CCUCGUc -3' miRNA: 3'- cGCUGCU---------UGCGGCCUU-GCaGGAGCGu -5' |
|||||||
5276 | 3' | -56 | NC_001798.1 | + | 140216 | 0.7 | 0.771295 |
Target: 5'- uGCGugGGGuCGCCGacccaGACGgCCUCGCu -3' miRNA: 3'- -CGCugCUU-GCGGCc----UUGCaGGAGCGu -5' |
|||||||
5276 | 3' | -56 | NC_001798.1 | + | 125430 | 0.7 | 0.771295 |
Target: 5'- aGCGGCGAGUGCUcgcagcagucguGGAGCGUCCcgaCGCc -3' miRNA: 3'- -CGCUGCUUGCGG------------CCUUGCAGGa--GCGu -5' |
|||||||
5276 | 3' | -56 | NC_001798.1 | + | 75674 | 0.7 | 0.771295 |
Target: 5'- -aGACGGACGCCuuuuACGgggaCCUCGCGg -3' miRNA: 3'- cgCUGCUUGCGGccu-UGCa---GGAGCGU- -5' |
|||||||
5276 | 3' | -56 | NC_001798.1 | + | 8946 | 0.7 | 0.770371 |
Target: 5'- uGCGGCGGGguggcCGCCGGAccuuuauGCG-CCUCgGCGa -3' miRNA: 3'- -CGCUGCUU-----GCGGCCU-------UGCaGGAG-CGU- -5' |
|||||||
5276 | 3' | -56 | NC_001798.1 | + | 107041 | 0.7 | 0.762002 |
Target: 5'- gGCGACGGACGCCGuuuuGGC-UCCUCa-- -3' miRNA: 3'- -CGCUGCUUGCGGCc---UUGcAGGAGcgu -5' |
|||||||
5276 | 3' | -56 | NC_001798.1 | + | 77862 | 0.71 | 0.684382 |
Target: 5'- cGCGGCcAACGCCGaGGCGgucacCCUCGCc -3' miRNA: 3'- -CGCUGcUUGCGGCcUUGCa----GGAGCGu -5' |
|||||||
5276 | 3' | -56 | NC_001798.1 | + | 102499 | 0.71 | 0.685378 |
Target: 5'- gGgGACGGgccgGCGCCGGggUGUCCguaggccaccgucccCGCGg -3' miRNA: 3'- -CgCUGCU----UGCGGCCuuGCAGGa--------------GCGU- -5' |
|||||||
5276 | 3' | -56 | NC_001798.1 | + | 134999 | 0.71 | 0.70421 |
Target: 5'- cGCGGUGGGCGCCaGGGuCGUCCUgccccCGCGg -3' miRNA: 3'- -CGCUGCUUGCGG-CCUuGCAGGA-----GCGU- -5' |
|||||||
5276 | 3' | -56 | NC_001798.1 | + | 112780 | 0.71 | 0.71404 |
Target: 5'- -gGGCGGACGCaCGGAuguGCGg-CUCGCGa -3' miRNA: 3'- cgCUGCUUGCG-GCCU---UGCagGAGCGU- -5' |
|||||||
5276 | 3' | -56 | NC_001798.1 | + | 124361 | 0.72 | 0.634224 |
Target: 5'- cCGACcAGCGCCGGGugGcgCCUCuGCGu -3' miRNA: 3'- cGCUGcUUGCGGCCUugCa-GGAG-CGU- -5' |
|||||||
5276 | 3' | -56 | NC_001798.1 | + | 149988 | 0.72 | 0.634224 |
Target: 5'- gGCGcccGCGGACGCCGGGGCGagcggCC-CGUg -3' miRNA: 3'- -CGC---UGCUUGCGGCCUUGCa----GGaGCGu -5' |
|||||||
5276 | 3' | -56 | NC_001798.1 | + | 51190 | 0.72 | 0.64429 |
Target: 5'- gGCGGCGccccccCGCCGG-GCGUCCUuucCGCGc -3' miRNA: 3'- -CGCUGCuu----GCGGCCuUGCAGGA---GCGU- -5' |
|||||||
5276 | 3' | -56 | NC_001798.1 | + | 77494 | 0.72 | 0.654347 |
Target: 5'- cGCGACGAccGCuGCuCGGGAaagCCUCGCGg -3' miRNA: 3'- -CGCUGCU--UG-CG-GCCUUgcaGGAGCGU- -5' |
|||||||
5276 | 3' | -56 | NC_001798.1 | + | 104518 | 0.72 | 0.654347 |
Target: 5'- cGCGGCGGcgGCG-CGGuuGACGUCgUCGCGg -3' miRNA: 3'- -CGCUGCU--UGCgGCC--UUGCAGgAGCGU- -5' |
|||||||
5276 | 3' | -56 | NC_001798.1 | + | 66924 | 0.72 | 0.661377 |
Target: 5'- uGCGACGAACgacaacgucgggcuGCaCGGAGuCGUCCgacCGCGa -3' miRNA: 3'- -CGCUGCUUG--------------CG-GCCUU-GCAGGa--GCGU- -5' |
|||||||
5276 | 3' | -56 | NC_001798.1 | + | 28134 | 0.72 | 0.624156 |
Target: 5'- aGCGACGAcgcggacuACGCCGGcAACGaCgaCGCAg -3' miRNA: 3'- -CGCUGCU--------UGCGGCC-UUGCaGgaGCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home