miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5276 3' -56 NC_001798.1 + 77494 0.72 0.654347
Target:  5'- cGCGACGAccGCuGCuCGGGAaagCCUCGCGg -3'
miRNA:   3'- -CGCUGCU--UG-CG-GCCUUgcaGGAGCGU- -5'
5276 3' -56 NC_001798.1 + 28134 0.72 0.624156
Target:  5'- aGCGACGAcgcggacuACGCCGGcAACGaCgaCGCAg -3'
miRNA:   3'- -CGCUGCU--------UGCGGCC-UUGCaGgaGCGU- -5'
5276 3' -56 NC_001798.1 + 149988 0.72 0.634224
Target:  5'- gGCGcccGCGGACGCCGGGGCGagcggCC-CGUg -3'
miRNA:   3'- -CGC---UGCUUGCGGCCUUGCa----GGaGCGu -5'
5276 3' -56 NC_001798.1 + 66924 0.72 0.661377
Target:  5'- uGCGACGAACgacaacgucgggcuGCaCGGAGuCGUCCgacCGCGa -3'
miRNA:   3'- -CGCUGCUUG--------------CG-GCCUU-GCAGGa--GCGU- -5'
5276 3' -56 NC_001798.1 + 104518 0.72 0.654347
Target:  5'- cGCGGCGGcgGCG-CGGuuGACGUCgUCGCGg -3'
miRNA:   3'- -CGCUGCU--UGCgGCC--UUGCAGgAGCGU- -5'
5276 3' -56 NC_001798.1 + 130419 0.72 0.664386
Target:  5'- gGCGACGAGCGCCaGGGCGacgcggacUCC-CGUc -3'
miRNA:   3'- -CGCUGCUUGCGGcCUUGC--------AGGaGCGu -5'
5276 3' -56 NC_001798.1 + 134999 0.71 0.70421
Target:  5'- cGCGGUGGGCGCCaGGGuCGUCCUgccccCGCGg -3'
miRNA:   3'- -CGCUGCUUGCGG-CCUuGCAGGA-----GCGU- -5'
5276 3' -56 NC_001798.1 + 112780 0.71 0.71404
Target:  5'- -gGGCGGACGCaCGGAuguGCGg-CUCGCGa -3'
miRNA:   3'- cgCUGCUUGCG-GCCU---UGCagGAGCGU- -5'
5276 3' -56 NC_001798.1 + 102499 0.71 0.685378
Target:  5'- gGgGACGGgccgGCGCCGGggUGUCCguaggccaccgucccCGCGg -3'
miRNA:   3'- -CgCUGCU----UGCGGCCuuGCAGGa--------------GCGU- -5'
5276 3' -56 NC_001798.1 + 77862 0.71 0.684382
Target:  5'- cGCGGCcAACGCCGaGGCGgucacCCUCGCc -3'
miRNA:   3'- -CGCUGcUUGCGGCcUUGCa----GGAGCGu -5'
5276 3' -56 NC_001798.1 + 4779 0.7 0.762002
Target:  5'- gGCGGCGGcguCGUCGGccuCGUCUUCGUu -3'
miRNA:   3'- -CGCUGCUu--GCGGCCuu-GCAGGAGCGu -5'
5276 3' -56 NC_001798.1 + 125430 0.7 0.771295
Target:  5'- aGCGGCGAGUGCUcgcagcagucguGGAGCGUCCcgaCGCc -3'
miRNA:   3'- -CGCUGCUUGCGG------------CCUUGCAGGa--GCGu -5'
5276 3' -56 NC_001798.1 + 140216 0.7 0.771295
Target:  5'- uGCGugGGGuCGCCGacccaGACGgCCUCGCu -3'
miRNA:   3'- -CGCugCUU-GCGGCc----UUGCaGGAGCGu -5'
5276 3' -56 NC_001798.1 + 46028 0.7 0.780468
Target:  5'- cGCGACGAGCaGCUGG-GCGaCCUUGg- -3'
miRNA:   3'- -CGCUGCUUG-CGGCCuUGCaGGAGCgu -5'
5276 3' -56 NC_001798.1 + 58617 0.7 0.733489
Target:  5'- aGCGGCGGugGCgGGGACaggCCUUGgAa -3'
miRNA:   3'- -CGCUGCUugCGgCCUUGca-GGAGCgU- -5'
5276 3' -56 NC_001798.1 + 107041 0.7 0.762002
Target:  5'- gGCGACGGACGCCGuuuuGGC-UCCUCa-- -3'
miRNA:   3'- -CGCUGCUUGCGGCc---UUGcAGGAGcgu -5'
5276 3' -56 NC_001798.1 + 135527 0.7 0.752598
Target:  5'- -gGACGccCGCCGGGcccucgagGCGUCCgugCGCGc -3'
miRNA:   3'- cgCUGCuuGCGGCCU--------UGCAGGa--GCGU- -5'
5276 3' -56 NC_001798.1 + 153007 0.7 0.752598
Target:  5'- cGgGGCGGuCGCCGGGGCGgagUCCgggcccgCGCGg -3'
miRNA:   3'- -CgCUGCUuGCGGCCUUGC---AGGa------GCGU- -5'
5276 3' -56 NC_001798.1 + 95059 0.7 0.762002
Target:  5'- uCGACGcgcaccccGGCGCCuGGACGUCCauguUCGCGa -3'
miRNA:   3'- cGCUGC--------UUGCGGcCUUGCAGG----AGCGU- -5'
5276 3' -56 NC_001798.1 + 102223 0.7 0.762002
Target:  5'- uCGAcCGGGCGCggcuCGGGGCGggCCUCGCc -3'
miRNA:   3'- cGCU-GCUUGCG----GCCUUGCa-GGAGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.