miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5276 3' -56 NC_001798.1 + 4779 0.7 0.762002
Target:  5'- gGCGGCGGcguCGUCGGccuCGUCUUCGUu -3'
miRNA:   3'- -CGCUGCUu--GCGGCCuu-GCAGGAGCGu -5'
5276 3' -56 NC_001798.1 + 102223 0.7 0.762002
Target:  5'- uCGAcCGGGCGCggcuCGGGGCGggCCUCGCc -3'
miRNA:   3'- cGCU-GCUUGCG----GCCUUGCa-GGAGCGu -5'
5276 3' -56 NC_001798.1 + 95059 0.7 0.762002
Target:  5'- uCGACGcgcaccccGGCGCCuGGACGUCCauguUCGCGa -3'
miRNA:   3'- cGCUGC--------UUGCGGcCUUGCAGG----AGCGU- -5'
5276 3' -56 NC_001798.1 + 8946 0.7 0.770371
Target:  5'- uGCGGCGGGguggcCGCCGGAccuuuauGCG-CCUCgGCGa -3'
miRNA:   3'- -CGCUGCUU-----GCGGCCU-------UGCaGGAG-CGU- -5'
5276 3' -56 NC_001798.1 + 140216 0.7 0.771295
Target:  5'- uGCGugGGGuCGCCGacccaGACGgCCUCGCu -3'
miRNA:   3'- -CGCugCUU-GCGGCc----UUGCaGGAGCGu -5'
5276 3' -56 NC_001798.1 + 91115 0.7 0.771295
Target:  5'- uGCGcUGcucCGCgGGGGCGUCCUCGUc -3'
miRNA:   3'- -CGCuGCuu-GCGgCCUUGCAGGAGCGu -5'
5276 3' -56 NC_001798.1 + 16619 0.7 0.771295
Target:  5'- cGUGACGGacgacGCGCCGGGGCaggUCUUGCc -3'
miRNA:   3'- -CGCUGCU-----UGCGGCCUUGca-GGAGCGu -5'
5276 3' -56 NC_001798.1 + 4732 0.7 0.771295
Target:  5'- uCGACGGccuccccggACGCCGGGGcCG-CCUCGUc -3'
miRNA:   3'- cGCUGCU---------UGCGGCCUU-GCaGGAGCGu -5'
5276 3' -56 NC_001798.1 + 125430 0.7 0.771295
Target:  5'- aGCGGCGAGUGCUcgcagcagucguGGAGCGUCCcgaCGCc -3'
miRNA:   3'- -CGCUGCUUGCGG------------CCUUGCAGGa--GCGu -5'
5276 3' -56 NC_001798.1 + 75674 0.7 0.771295
Target:  5'- -aGACGGACGCCuuuuACGgggaCCUCGCGg -3'
miRNA:   3'- cgCUGCUUGCGGccu-UGCa---GGAGCGU- -5'
5276 3' -56 NC_001798.1 + 46028 0.7 0.780468
Target:  5'- cGCGACGAGCaGCUGG-GCGaCCUUGg- -3'
miRNA:   3'- -CGCUGCUUG-CGGCCuUGCaGGAGCgu -5'
5276 3' -56 NC_001798.1 + 126101 0.7 0.780468
Target:  5'- cGCGGCGAACGCgucucugugggGGGACGgcgaCCUgGCGg -3'
miRNA:   3'- -CGCUGCUUGCGg----------CCUUGCa---GGAgCGU- -5'
5276 3' -56 NC_001798.1 + 113353 0.69 0.786813
Target:  5'- -gGGCGGugGCGCCGGcAuguauuauagccgcCGUCCUCGCc -3'
miRNA:   3'- cgCUGCU--UGCGGCCuU--------------GCAGGAGCGu -5'
5276 3' -56 NC_001798.1 + 62466 0.69 0.79842
Target:  5'- cGCGACG-GCGcCCGGu-CGUCCUCc-- -3'
miRNA:   3'- -CGCUGCuUGC-GGCCuuGCAGGAGcgu -5'
5276 3' -56 NC_001798.1 + 22990 0.69 0.79842
Target:  5'- uCGACGAGCcuGCCGcGGACGgcgucgUCUCGCc -3'
miRNA:   3'- cGCUGCUUG--CGGC-CUUGCa-----GGAGCGu -5'
5276 3' -56 NC_001798.1 + 108595 0.69 0.814936
Target:  5'- cGCGGCc-GCGCCGGAccgcgaggggcuuACGUUCcCGCGg -3'
miRNA:   3'- -CGCUGcuUGCGGCCU-------------UGCAGGaGCGU- -5'
5276 3' -56 NC_001798.1 + 93279 0.69 0.81579
Target:  5'- cCGGCGc-CGUCGGGGCGUaCCUgGCGc -3'
miRNA:   3'- cGCUGCuuGCGGCCUUGCA-GGAgCGU- -5'
5276 3' -56 NC_001798.1 + 134237 0.69 0.81579
Target:  5'- uGUGGCGGGCGCUGuaugcguGCGUUCUgGCGg -3'
miRNA:   3'- -CGCUGCUUGCGGCcu-----UGCAGGAgCGU- -5'
5276 3' -56 NC_001798.1 + 150459 0.69 0.81579
Target:  5'- gGCGACGGccGCGCgGGGGCGcgCggCGCGc -3'
miRNA:   3'- -CGCUGCU--UGCGgCCUUGCa-GgaGCGU- -5'
5276 3' -56 NC_001798.1 + 105543 0.69 0.824236
Target:  5'- gGCGACGAugaaGCGCCuGuguucccaAACGUCCagCGCGu -3'
miRNA:   3'- -CGCUGCU----UGCGGcC--------UUGCAGGa-GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.