Results 101 - 119 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5276 | 3' | -56 | NC_001798.1 | + | 54187 | 0.66 | 0.916386 |
Target: 5'- gGCGGCGGuggacaGCCaGGAGCG-CUUCuGCAg -3' miRNA: 3'- -CGCUGCUug----CGG-CCUUGCaGGAG-CGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 149398 | 0.66 | 0.916386 |
Target: 5'- cGCGGgGGGCGUCGGGuaguCGgggggCCUcaCGCAg -3' miRNA: 3'- -CGCUgCUUGCGGCCUu---GCa----GGA--GCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 149460 | 0.66 | 0.916386 |
Target: 5'- uGCGGCGGcuccACGCgGGGgccGCGgCC-CGCAg -3' miRNA: 3'- -CGCUGCU----UGCGgCCU---UGCaGGaGCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 2564 | 0.66 | 0.916386 |
Target: 5'- aGgGGCGGcCGCgGGGcgggggGCGUCCgCGCGg -3' miRNA: 3'- -CgCUGCUuGCGgCCU------UGCAGGaGCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 83534 | 0.66 | 0.921949 |
Target: 5'- cGCGcaugcCGAGCGCCcGGACGUUgUCgGCGg -3' miRNA: 3'- -CGCu----GCUUGCGGcCUUGCAGgAG-CGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 85289 | 0.66 | 0.921949 |
Target: 5'- gGgGGCGGGgGCCGGG--GUCCgccCGCGg -3' miRNA: 3'- -CgCUGCUUgCGGCCUugCAGGa--GCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 129674 | 0.66 | 0.926759 |
Target: 5'- cGCGugGucacccgGGCGCCGGGGCcccaGUaCCggcgCGCAu -3' miRNA: 3'- -CGCugC-------UUGCGGCCUUG----CA-GGa---GCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 143677 | 0.66 | 0.927282 |
Target: 5'- cGCGGCGAggaaAUGCUGGcACGUCCcaaaCGgGa -3' miRNA: 3'- -CGCUGCU----UGCGGCCuUGCAGGa---GCgU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 20871 | 0.66 | 0.927282 |
Target: 5'- cCGACGAGCuggggaggaCGGGGCGUCUgCGCu -3' miRNA: 3'- cGCUGCUUGcg-------GCCUUGCAGGaGCGu -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 51257 | 0.66 | 0.927282 |
Target: 5'- --cGCGGACGCCGGGACagcgCCaucaCGCGg -3' miRNA: 3'- cgcUGCUUGCGGCCUUGca--GGa---GCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 2973 | 0.66 | 0.927282 |
Target: 5'- uCGGCGuGCGgCGGGGCGgccggCC-CGCGg -3' miRNA: 3'- cGCUGCuUGCgGCCUUGCa----GGaGCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 125725 | 0.66 | 0.927282 |
Target: 5'- gGCGGCGAGaugaGCCGaGACG-CCgccaCGCGg -3' miRNA: 3'- -CGCUGCUUg---CGGCcUUGCaGGa---GCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 97631 | 0.66 | 0.927282 |
Target: 5'- cGCGACGcgggcCGCCGcGGACGUgCgggagCGCc -3' miRNA: 3'- -CGCUGCuu---GCGGC-CUUGCAgGa----GCGu -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 96667 | 0.66 | 0.932382 |
Target: 5'- aGCGGCGccacggccGCGCUGGAgcGCGUCCgggaGUu -3' miRNA: 3'- -CGCUGCu-------UGCGGCCU--UGCAGGag--CGu -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 48867 | 0.66 | 0.932382 |
Target: 5'- cCGcCGGGCGCuCGGGcACGUCUcauUCGCc -3' miRNA: 3'- cGCuGCUUGCG-GCCU-UGCAGG---AGCGu -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 55912 | 0.66 | 0.932382 |
Target: 5'- gGCGACGAGCGCaaaGGccccGACGa--UCGCu -3' miRNA: 3'- -CGCUGCUUGCGg--CC----UUGCaggAGCGu -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 104648 | 0.66 | 0.932382 |
Target: 5'- aCGugGGugGCCaGGGcccCGUgCUCGUAg -3' miRNA: 3'- cGCugCUugCGG-CCUu--GCAgGAGCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 153380 | 0.66 | 0.932382 |
Target: 5'- cGCcACGcGGCGCCGGAACcgGUCgcggucggcccgCUCGCGc -3' miRNA: 3'- -CGcUGC-UUGCGGCCUUG--CAG------------GAGCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 94542 | 0.66 | 0.937252 |
Target: 5'- cGCGggcGCGAGCGCCaacGCGUCCgaggcCGCc -3' miRNA: 3'- -CGC---UGCUUGCGGccuUGCAGGa----GCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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