miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5276 3' -56 NC_001798.1 + 86907 0.78 0.334762
Target:  5'- gGCGugGAGCGCCGG-GCcUCC-CGCAa -3'
miRNA:   3'- -CGCugCUUGCGGCCuUGcAGGaGCGU- -5'
5276 3' -56 NC_001798.1 + 87189 0.66 0.910592
Target:  5'- gGCGACGGGCgGCUGGccacCGUCagcCGCGa -3'
miRNA:   3'- -CGCUGCUUG-CGGCCuu--GCAGga-GCGU- -5'
5276 3' -56 NC_001798.1 + 91115 0.7 0.771295
Target:  5'- uGCGcUGcucCGCgGGGGCGUCCUCGUc -3'
miRNA:   3'- -CGCuGCuu-GCGgCCUUGCAGGAGCGu -5'
5276 3' -56 NC_001798.1 + 93279 0.69 0.81579
Target:  5'- cCGGCGc-CGUCGGGGCGUaCCUgGCGc -3'
miRNA:   3'- cGCUGCuuGCGGCCUUGCA-GGAgCGU- -5'
5276 3' -56 NC_001798.1 + 94542 0.66 0.937252
Target:  5'- cGCGggcGCGAGCGCCaacGCGUCCgaggcCGCc -3'
miRNA:   3'- -CGC---UGCUUGCGGccuUGCAGGa----GCGu -5'
5276 3' -56 NC_001798.1 + 95059 0.7 0.762002
Target:  5'- uCGACGcgcaccccGGCGCCuGGACGUCCauguUCGCGa -3'
miRNA:   3'- cGCUGC--------UUGCGGcCUUGCAGG----AGCGU- -5'
5276 3' -56 NC_001798.1 + 96667 0.66 0.932382
Target:  5'- aGCGGCGccacggccGCGCUGGAgcGCGUCCgggaGUu -3'
miRNA:   3'- -CGCUGCu-------UGCGGCCU--UGCAGGag--CGu -5'
5276 3' -56 NC_001798.1 + 96983 0.67 0.90457
Target:  5'- cGCGGCGGGCGgCGGGGCcagggCCggccCGCc -3'
miRNA:   3'- -CGCUGCUUGCgGCCUUGca---GGa---GCGu -5'
5276 3' -56 NC_001798.1 + 97545 0.67 0.90457
Target:  5'- -aGGCGuGGCGCgGGGACG-CC-CGCGa -3'
miRNA:   3'- cgCUGC-UUGCGgCCUUGCaGGaGCGU- -5'
5276 3' -56 NC_001798.1 + 97631 0.66 0.927282
Target:  5'- cGCGACGcgggcCGCCGcGGACGUgCgggagCGCc -3'
miRNA:   3'- -CGCUGCuu---GCGGC-CUUGCAgGa----GCGu -5'
5276 3' -56 NC_001798.1 + 102223 0.7 0.762002
Target:  5'- uCGAcCGGGCGCggcuCGGGGCGggCCUCGCc -3'
miRNA:   3'- cGCU-GCUUGCG----GCCUUGCa-GGAGCGu -5'
5276 3' -56 NC_001798.1 + 102361 0.66 0.915817
Target:  5'- cCGGCGGcCGCCGGAAgcccaccCG-CCUgGCGg -3'
miRNA:   3'- cGCUGCUuGCGGCCUU-------GCaGGAgCGU- -5'
5276 3' -56 NC_001798.1 + 102499 0.71 0.685378
Target:  5'- gGgGACGGgccgGCGCCGGggUGUCCguaggccaccgucccCGCGg -3'
miRNA:   3'- -CgCUGCU----UGCGGCCuuGCAGGa--------------GCGU- -5'
5276 3' -56 NC_001798.1 + 102649 0.68 0.863793
Target:  5'- gGCGGCGGAgggGCCGGGGCGcCCgauGCc -3'
miRNA:   3'- -CGCUGCUUg--CGGCCUUGCaGGag-CGu -5'
5276 3' -56 NC_001798.1 + 102751 0.68 0.832514
Target:  5'- aCGGCGAccugcgGCGCgGGAACG--CUCGCGg -3'
miRNA:   3'- cGCUGCU------UGCGgCCUUGCagGAGCGU- -5'
5276 3' -56 NC_001798.1 + 104326 0.68 0.871122
Target:  5'- aGCGAUGGccucCGCCGGGACGgcUCC-CGgGa -3'
miRNA:   3'- -CGCUGCUu---GCGGCCUUGC--AGGaGCgU- -5'
5276 3' -56 NC_001798.1 + 104518 0.72 0.654347
Target:  5'- cGCGGCGGcgGCG-CGGuuGACGUCgUCGCGg -3'
miRNA:   3'- -CGCUGCU--UGCgGCC--UUGCAGgAGCGU- -5'
5276 3' -56 NC_001798.1 + 104648 0.66 0.932382
Target:  5'- aCGugGGugGCCaGGGcccCGUgCUCGUAg -3'
miRNA:   3'- cGCugCUugCGG-CCUu--GCAgGAGCGU- -5'
5276 3' -56 NC_001798.1 + 105543 0.69 0.824236
Target:  5'- gGCGACGAugaaGCGCCuGuguucccaAACGUCCagCGCGu -3'
miRNA:   3'- -CGCUGCU----UGCGGcC--------UUGCAGGa-GCGU- -5'
5276 3' -56 NC_001798.1 + 107041 0.7 0.762002
Target:  5'- gGCGACGGACGCCGuuuuGGC-UCCUCa-- -3'
miRNA:   3'- -CGCUGCUUGCGGCc---UUGcAGGAGcgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.