miRNA display CGI


Results 81 - 100 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5276 3' -56 NC_001798.1 + 108595 0.69 0.814936
Target:  5'- cGCGGCc-GCGCCGGAccgcgaggggcuuACGUUCcCGCGg -3'
miRNA:   3'- -CGCUGcuUGCGGCCU-------------UGCAGGaGCGU- -5'
5276 3' -56 NC_001798.1 + 112780 0.71 0.71404
Target:  5'- -gGGCGGACGCaCGGAuguGCGg-CUCGCGa -3'
miRNA:   3'- cgCUGCUUGCG-GCCU---UGCagGAGCGU- -5'
5276 3' -56 NC_001798.1 + 113353 0.69 0.786813
Target:  5'- -gGGCGGugGCGCCGGcAuguauuauagccgcCGUCCUCGCc -3'
miRNA:   3'- cgCUGCU--UGCGGCCuU--------------GCAGGAGCGu -5'
5276 3' -56 NC_001798.1 + 113822 0.67 0.90457
Target:  5'- gGgGACagaGGACGCCGGccgGUCCUCGg- -3'
miRNA:   3'- -CgCUG---CUUGCGGCCuugCAGGAGCgu -5'
5276 3' -56 NC_001798.1 + 120278 0.67 0.90457
Target:  5'- uGUGGCGAugGCCacGGccgaGUCCUgGCu -3'
miRNA:   3'- -CGCUGCUugCGG--CCuug-CAGGAgCGu -5'
5276 3' -56 NC_001798.1 + 124361 0.72 0.634224
Target:  5'- cCGACcAGCGCCGGGugGcgCCUCuGCGu -3'
miRNA:   3'- cGCUGcUUGCGGCCUugCa-GGAG-CGU- -5'
5276 3' -56 NC_001798.1 + 125430 0.7 0.771295
Target:  5'- aGCGGCGAGUGCUcgcagcagucguGGAGCGUCCcgaCGCc -3'
miRNA:   3'- -CGCUGCUUGCGG------------CCUUGCAGGa--GCGu -5'
5276 3' -56 NC_001798.1 + 125725 0.66 0.927282
Target:  5'- gGCGGCGAGaugaGCCGaGACG-CCgccaCGCGg -3'
miRNA:   3'- -CGCUGCUUg---CGGCcUUGCaGGa---GCGU- -5'
5276 3' -56 NC_001798.1 + 126101 0.7 0.780468
Target:  5'- cGCGGCGAACGCgucucugugggGGGACGgcgaCCUgGCGg -3'
miRNA:   3'- -CGCUGCUUGCGg----------CCUUGCa---GGAgCGU- -5'
5276 3' -56 NC_001798.1 + 128612 0.68 0.856261
Target:  5'- aCGACGccGACGCCGGG-CG-CUUCGUc -3'
miRNA:   3'- cGCUGC--UUGCGGCCUuGCaGGAGCGu -5'
5276 3' -56 NC_001798.1 + 128881 0.75 0.468243
Target:  5'- cGCGGCGAuCGCCGGAgGCGUuCCggGCGu -3'
miRNA:   3'- -CGCUGCUuGCGGCCU-UGCA-GGagCGU- -5'
5276 3' -56 NC_001798.1 + 129674 0.66 0.926759
Target:  5'- cGCGugGucacccgGGCGCCGGGGCcccaGUaCCggcgCGCAu -3'
miRNA:   3'- -CGCugC-------UUGCGGCCUUG----CA-GGa---GCGU- -5'
5276 3' -56 NC_001798.1 + 130419 0.72 0.664386
Target:  5'- gGCGACGAGCGCCaGGGCGacgcggacUCC-CGUc -3'
miRNA:   3'- -CGCUGCUUGCGGcCUUGC--------AGGaGCGu -5'
5276 3' -56 NC_001798.1 + 131351 0.7 0.733489
Target:  5'- cGCGACGucgGCGcCCGGcGCGgCCUCGgGg -3'
miRNA:   3'- -CGCUGCu--UGC-GGCCuUGCaGGAGCgU- -5'
5276 3' -56 NC_001798.1 + 134237 0.69 0.81579
Target:  5'- uGUGGCGGGCGCUGuaugcguGCGUUCUgGCGg -3'
miRNA:   3'- -CGCUGCUUGCGGCcu-----UGCAGGAgCGU- -5'
5276 3' -56 NC_001798.1 + 134365 0.68 0.848533
Target:  5'- uCGugGGGCccGCCGGc-CGcUCCUCGCGc -3'
miRNA:   3'- cGCugCUUG--CGGCCuuGC-AGGAGCGU- -5'
5276 3' -56 NC_001798.1 + 134999 0.71 0.70421
Target:  5'- cGCGGUGGGCGCCaGGGuCGUCCUgccccCGCGg -3'
miRNA:   3'- -CGCUGCUUGCGG-CCUuGCAGGA-----GCGU- -5'
5276 3' -56 NC_001798.1 + 135527 0.7 0.752598
Target:  5'- -gGACGccCGCCGGGcccucgagGCGUCCgugCGCGc -3'
miRNA:   3'- cgCUGCuuGCGGCCU--------UGCAGGa--GCGU- -5'
5276 3' -56 NC_001798.1 + 139133 0.66 0.912937
Target:  5'- cGCGugGAagaucgccgccugcaGCuGUCGGGugGcggCCUCGCu -3'
miRNA:   3'- -CGCugCU---------------UG-CGGCCUugCa--GGAGCGu -5'
5276 3' -56 NC_001798.1 + 139371 0.7 0.733489
Target:  5'- gGCGGgGAGgGCucgCGGGACGUCCggGCAc -3'
miRNA:   3'- -CGCUgCUUgCG---GCCUUGCAGGagCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.