miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5276 3' -56 NC_001798.1 + 83534 0.66 0.921949
Target:  5'- cGCGcaugcCGAGCGCCcGGACGUUgUCgGCGg -3'
miRNA:   3'- -CGCu----GCUUGCGGcCUUGCAGgAG-CGU- -5'
5276 3' -56 NC_001798.1 + 81332 0.73 0.584016
Target:  5'- gGCaGGCGGAC-CCGGGG-GUCCUCGCc -3'
miRNA:   3'- -CG-CUGCUUGcGGCCUUgCAGGAGCGu -5'
5276 3' -56 NC_001798.1 + 81105 0.75 0.459099
Target:  5'- cGCGGCGAGCGCCGccGACGcggaccccuUCUUCGCGc -3'
miRNA:   3'- -CGCUGCUUGCGGCc-UUGC---------AGGAGCGU- -5'
5276 3' -56 NC_001798.1 + 80344 0.76 0.4411
Target:  5'- cGgGACccAGCGCCGGGACGUCCcggCGCu -3'
miRNA:   3'- -CgCUGc-UUGCGGCCUUGCAGGa--GCGu -5'
5276 3' -56 NC_001798.1 + 77862 0.71 0.684382
Target:  5'- cGCGGCcAACGCCGaGGCGgucacCCUCGCc -3'
miRNA:   3'- -CGCUGcUUGCGGCcUUGCa----GGAGCGu -5'
5276 3' -56 NC_001798.1 + 77494 0.72 0.654347
Target:  5'- cGCGACGAccGCuGCuCGGGAaagCCUCGCGg -3'
miRNA:   3'- -CGCUGCU--UG-CG-GCCUUgcaGGAGCGU- -5'
5276 3' -56 NC_001798.1 + 75674 0.7 0.771295
Target:  5'- -aGACGGACGCCuuuuACGgggaCCUCGCGg -3'
miRNA:   3'- cgCUGCUUGCGGccu-UGCa---GGAGCGU- -5'
5276 3' -56 NC_001798.1 + 72564 0.7 0.74309
Target:  5'- aCGACGccaagcgcGCGCUGGucGCGUCcCUCGCGg -3'
miRNA:   3'- cGCUGCu-------UGCGGCCu-UGCAG-GAGCGU- -5'
5276 3' -56 NC_001798.1 + 69492 0.73 0.583017
Target:  5'- aGCGAUGGgcgggcgcaggacGCGCCGGAGCGgggcguggCC-CGCGa -3'
miRNA:   3'- -CGCUGCU-------------UGCGGCCUUGCa-------GGaGCGU- -5'
5276 3' -56 NC_001798.1 + 69296 0.7 0.74309
Target:  5'- aGCGGgGGGCGCCgGGGACGgucagcccUCC-CGCGc -3'
miRNA:   3'- -CGCUgCUUGCGG-CCUUGC--------AGGaGCGU- -5'
5276 3' -56 NC_001798.1 + 67366 0.76 0.431374
Target:  5'- cGCGACGAagGCGCCGGuggacguAGCGcCCUCGa- -3'
miRNA:   3'- -CGCUGCU--UGCGGCC-------UUGCaGGAGCgu -5'
5276 3' -56 NC_001798.1 + 66924 0.72 0.661377
Target:  5'- uGCGACGAACgacaacgucgggcuGCaCGGAGuCGUCCgacCGCGa -3'
miRNA:   3'- -CGCUGCUUG--------------CG-GCCUU-GCAGGa--GCGU- -5'
5276 3' -56 NC_001798.1 + 63598 0.67 0.891189
Target:  5'- gGCGGCGAACGaggCGGcaaaaaaGACGcCCUCGa- -3'
miRNA:   3'- -CGCUGCUUGCg--GCC-------UUGCaGGAGCgu -5'
5276 3' -56 NC_001798.1 + 62466 0.69 0.79842
Target:  5'- cGCGACG-GCGcCCGGu-CGUCCUCc-- -3'
miRNA:   3'- -CGCUGCuUGC-GGCCuuGCAGGAGcgu -5'
5276 3' -56 NC_001798.1 + 58617 0.7 0.733489
Target:  5'- aGCGGCGGugGCgGGGACaggCCUUGgAa -3'
miRNA:   3'- -CGCUGCUugCGgCCUUGca-GGAGCgU- -5'
5276 3' -56 NC_001798.1 + 56528 0.68 0.832514
Target:  5'- cGUGGCGgu-GCCGGGGCG-CC-CGCAc -3'
miRNA:   3'- -CGCUGCuugCGGCCUUGCaGGaGCGU- -5'
5276 3' -56 NC_001798.1 + 55912 0.66 0.932382
Target:  5'- gGCGACGAGCGCaaaGGccccGACGa--UCGCu -3'
miRNA:   3'- -CGCUGCUUGCGg--CC----UUGCaggAGCGu -5'
5276 3' -56 NC_001798.1 + 54187 0.66 0.916386
Target:  5'- gGCGGCGGuggacaGCCaGGAGCG-CUUCuGCAg -3'
miRNA:   3'- -CGCUGCUug----CGG-CCUUGCaGGAG-CGU- -5'
5276 3' -56 NC_001798.1 + 51257 0.66 0.927282
Target:  5'- --cGCGGACGCCGGGACagcgCCaucaCGCGg -3'
miRNA:   3'- cgcUGCUUGCGGCCUUGca--GGa---GCGU- -5'
5276 3' -56 NC_001798.1 + 51190 0.72 0.64429
Target:  5'- gGCGGCGccccccCGCCGG-GCGUCCUuucCGCGc -3'
miRNA:   3'- -CGCUGCuu----GCGGCCuUGCAGGA---GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.