miRNA display CGI


Results 81 - 100 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5276 3' -56 NC_001798.1 + 104326 0.68 0.871122
Target:  5'- aGCGAUGGccucCGCCGGGACGgcUCC-CGgGa -3'
miRNA:   3'- -CGCUGCUu---GCGGCCUUGC--AGGaGCgU- -5'
5276 3' -56 NC_001798.1 + 2628 0.68 0.871122
Target:  5'- gGCGGCGcccugGCCGGGGCGgggCuCUUGCGc -3'
miRNA:   3'- -CGCUGCuug--CGGCCUUGCa--G-GAGCGU- -5'
5276 3' -56 NC_001798.1 + 8853 0.68 0.871122
Target:  5'- uCGGCGG--GCCGGGAgGUCaUCGCGg -3'
miRNA:   3'- cGCUGCUugCGGCCUUgCAGgAGCGU- -5'
5276 3' -56 NC_001798.1 + 102649 0.68 0.863793
Target:  5'- gGCGGCGGAgggGCCGGGGCGcCCgauGCc -3'
miRNA:   3'- -CGCUGCUUg--CGGCCUUGCaGGag-CGu -5'
5276 3' -56 NC_001798.1 + 5922 0.68 0.863793
Target:  5'- -gGACGGGgGgCGGGcCGuUCCUCGCGc -3'
miRNA:   3'- cgCUGCUUgCgGCCUuGC-AGGAGCGU- -5'
5276 3' -56 NC_001798.1 + 2249 0.68 0.863793
Target:  5'- gGCGGCGGGCGCgccgccggggggCGGGGCGg---CGCAg -3'
miRNA:   3'- -CGCUGCUUGCG------------GCCUUGCaggaGCGU- -5'
5276 3' -56 NC_001798.1 + 128612 0.68 0.856261
Target:  5'- aCGACGccGACGCCGGG-CG-CUUCGUc -3'
miRNA:   3'- cGCUGC--UUGCGGCCUuGCaGGAGCGu -5'
5276 3' -56 NC_001798.1 + 151213 0.67 0.878245
Target:  5'- aGCGACaggGAGCGCgGGGcCGUCCgCGgGu -3'
miRNA:   3'- -CGCUG---CUUGCGgCCUuGCAGGaGCgU- -5'
5276 3' -56 NC_001798.1 + 47790 0.67 0.878245
Target:  5'- cGCG-CGAccGCGUCGuucGGCGUCCgUCGCGg -3'
miRNA:   3'- -CGCuGCU--UGCGGCc--UUGCAGG-AGCGU- -5'
5276 3' -56 NC_001798.1 + 63598 0.67 0.891189
Target:  5'- gGCGGCGAACGaggCGGcaaaaaaGACGcCCUCGa- -3'
miRNA:   3'- -CGCUGCUUGCg--GCC-------UUGCaGGAGCgu -5'
5276 3' -56 NC_001798.1 + 96983 0.67 0.90457
Target:  5'- cGCGGCGGGCGgCGGGGCcagggCCggccCGCc -3'
miRNA:   3'- -CGCUGCUUGCgGCCUUGca---GGa---GCGu -5'
5276 3' -56 NC_001798.1 + 24415 0.67 0.90457
Target:  5'- gGCGGCGGcguCGCCGGccGACGagCgCGCGg -3'
miRNA:   3'- -CGCUGCUu--GCGGCC--UUGCagGaGCGU- -5'
5276 3' -56 NC_001798.1 + 20469 0.67 0.90457
Target:  5'- gGCGAgcaGAGCGCCGGuGCG-CgUgCGCGa -3'
miRNA:   3'- -CGCUg--CUUGCGGCCuUGCaGgA-GCGU- -5'
5276 3' -56 NC_001798.1 + 4350 0.67 0.90457
Target:  5'- gGCGGcCGAGCGCCGGcggggGGCGcgCCg-GCGg -3'
miRNA:   3'- -CGCU-GCUUGCGGCC-----UUGCa-GGagCGU- -5'
5276 3' -56 NC_001798.1 + 4212 0.67 0.90457
Target:  5'- uGCGGCGcuggcgggGGCGCgGGcGGCGUCgUCGUc -3'
miRNA:   3'- -CGCUGC--------UUGCGgCC-UUGCAGgAGCGu -5'
5276 3' -56 NC_001798.1 + 97545 0.67 0.90457
Target:  5'- -aGGCGuGGCGCgGGGACG-CC-CGCGa -3'
miRNA:   3'- cgCUGC-UUGCGgCCUUGCaGGaGCGU- -5'
5276 3' -56 NC_001798.1 + 26445 0.67 0.898321
Target:  5'- cGCGACGAcgcggACGCgGGccCGcCCcCGCAg -3'
miRNA:   3'- -CGCUGCU-----UGCGgCCuuGCaGGaGCGU- -5'
5276 3' -56 NC_001798.1 + 18138 0.67 0.898321
Target:  5'- cGCGGCGuccACGauGGggUaGUCCUCGUc -3'
miRNA:   3'- -CGCUGCu--UGCggCCuuG-CAGGAGCGu -5'
5276 3' -56 NC_001798.1 + 150863 0.67 0.898321
Target:  5'- cGCGGCGG--GCUGGGAgGUUC-CGCGg -3'
miRNA:   3'- -CGCUGCUugCGGCCUUgCAGGaGCGU- -5'
5276 3' -56 NC_001798.1 + 14001 0.67 0.898321
Target:  5'- uUGGgGAuCGCCGGAuuauuuCGUCCUuccCGCAc -3'
miRNA:   3'- cGCUgCUuGCGGCCUu-----GCAGGA---GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.