Results 21 - 40 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5276 | 3' | -56 | NC_001798.1 | + | 139133 | 0.66 | 0.912937 |
Target: 5'- cGCGugGAagaucgccgccugcaGCuGUCGGGugGcggCCUCGCu -3' miRNA: 3'- -CGCugCU---------------UG-CGGCCUugCa--GGAGCGu -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 150651 | 0.66 | 0.912937 |
Target: 5'- cGCGGgGGGCguccugcccuccgccGCCGcGGCGUCUUCGCc -3' miRNA: 3'- -CGCUgCUUG---------------CGGCcUUGCAGGAGCGu -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 150423 | 0.66 | 0.910592 |
Target: 5'- gGCGGCGGcgGCG-CGGGGCGgacUCCggacgCGCGg -3' miRNA: 3'- -CGCUGCU--UGCgGCCUUGC---AGGa----GCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 87189 | 0.66 | 0.910592 |
Target: 5'- gGCGACGGGCgGCUGGccacCGUCagcCGCGa -3' miRNA: 3'- -CGCUGCUUG-CGGCCuu--GCAGga-GCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 97545 | 0.67 | 0.90457 |
Target: 5'- -aGGCGuGGCGCgGGGACG-CC-CGCGa -3' miRNA: 3'- cgCUGC-UUGCGgCCUUGCaGGaGCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 4212 | 0.67 | 0.90457 |
Target: 5'- uGCGGCGcuggcgggGGCGCgGGcGGCGUCgUCGUc -3' miRNA: 3'- -CGCUGC--------UUGCGgCC-UUGCAGgAGCGu -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 4350 | 0.67 | 0.90457 |
Target: 5'- gGCGGcCGAGCGCCGGcggggGGCGcgCCg-GCGg -3' miRNA: 3'- -CGCU-GCUUGCGGCC-----UUGCa-GGagCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 20469 | 0.67 | 0.90457 |
Target: 5'- gGCGAgcaGAGCGCCGGuGCG-CgUgCGCGa -3' miRNA: 3'- -CGCUg--CUUGCGGCCuUGCaGgA-GCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 24415 | 0.67 | 0.90457 |
Target: 5'- gGCGGCGGcguCGCCGGccGACGagCgCGCGg -3' miRNA: 3'- -CGCUGCUu--GCGGCC--UUGCagGaGCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 96983 | 0.67 | 0.90457 |
Target: 5'- cGCGGCGGGCGgCGGGGCcagggCCggccCGCc -3' miRNA: 3'- -CGCUGCUUGCgGCCUUGca---GGa---GCGu -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 113822 | 0.67 | 0.90457 |
Target: 5'- gGgGACagaGGACGCCGGccgGUCCUCGg- -3' miRNA: 3'- -CgCUG---CUUGCGGCCuugCAGGAGCgu -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 120278 | 0.67 | 0.90457 |
Target: 5'- uGUGGCGAugGCCacGGccgaGUCCUgGCu -3' miRNA: 3'- -CGCUGCUugCGG--CCuug-CAGGAgCGu -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 14001 | 0.67 | 0.898321 |
Target: 5'- uUGGgGAuCGCCGGAuuauuuCGUCCUuccCGCAc -3' miRNA: 3'- cGCUgCUuGCGGCCUu-----GCAGGA---GCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 150863 | 0.67 | 0.898321 |
Target: 5'- cGCGGCGG--GCUGGGAgGUUC-CGCGg -3' miRNA: 3'- -CGCUGCUugCGGCCUUgCAGGaGCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 18138 | 0.67 | 0.898321 |
Target: 5'- cGCGGCGuccACGauGGggUaGUCCUCGUc -3' miRNA: 3'- -CGCUGCu--UGCggCCuuG-CAGGAGCGu -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 26445 | 0.67 | 0.898321 |
Target: 5'- cGCGACGAcgcggACGCgGGccCGcCCcCGCAg -3' miRNA: 3'- -CGCUGCU-----UGCGgCCuuGCaGGaGCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 63598 | 0.67 | 0.891189 |
Target: 5'- gGCGGCGAACGaggCGGcaaaaaaGACGcCCUCGa- -3' miRNA: 3'- -CGCUGCUUGCg--GCC-------UUGCaGGAGCgu -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 151213 | 0.67 | 0.878245 |
Target: 5'- aGCGACaggGAGCGCgGGGcCGUCCgCGgGu -3' miRNA: 3'- -CGCUG---CUUGCGgCCUuGCAGGaGCgU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 149300 | 0.67 | 0.878245 |
Target: 5'- cGCGAcCGGAgGCCGuGGAaGUCCagCGCGc -3' miRNA: 3'- -CGCU-GCUUgCGGC-CUUgCAGGa-GCGU- -5' |
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5276 | 3' | -56 | NC_001798.1 | + | 141094 | 0.67 | 0.878245 |
Target: 5'- aCGGCaGAacuccugucgcuACGCCGGGACG-CCgccggCGCAu -3' miRNA: 3'- cGCUG-CU------------UGCGGCCUUGCaGGa----GCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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