miRNA display CGI


Results 21 - 40 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5276 5' -52.7 NC_001798.1 + 101973 0.66 0.979635
Target:  5'- ----aGGAGGCcccggggGGGCGAUGugCGGCg -3'
miRNA:   3'- uagugCUUCUG-------CCCGUUAUugGCCGg -5'
5276 5' -52.7 NC_001798.1 + 2529 0.66 0.977527
Target:  5'- --gGCGucGGCgGGGCGGggGGCgCGGCCc -3'
miRNA:   3'- uagUGCuuCUG-CCCGUUa-UUG-GCCGG- -5'
5276 5' -52.7 NC_001798.1 + 60998 0.66 0.977527
Target:  5'- --gGCGGAGG-GGGCGgAUGACgCGGaCCg -3'
miRNA:   3'- uagUGCUUCUgCCCGU-UAUUG-GCC-GG- -5'
5276 5' -52.7 NC_001798.1 + 34948 0.66 0.977527
Target:  5'- uUCGCGAAcGCGcGGCGccggaggGGgCGGCCg -3'
miRNA:   3'- uAGUGCUUcUGC-CCGUua-----UUgGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 36313 0.66 0.977527
Target:  5'- --gGCGggGcGCGGGCcggGGCCGGg- -3'
miRNA:   3'- uagUGCuuC-UGCCCGuuaUUGGCCgg -5'
5276 5' -52.7 NC_001798.1 + 91233 0.66 0.977527
Target:  5'- gGUCugaGCGAGGugGGGguuGUAgaaguucuGCCGGCg -3'
miRNA:   3'- -UAG---UGCUUCugCCCgu-UAU--------UGGCCGg -5'
5276 5' -52.7 NC_001798.1 + 97841 0.66 0.977527
Target:  5'- ---cUGAcGGCGGGCGcgGGCaCGGUCa -3'
miRNA:   3'- uaguGCUuCUGCCCGUuaUUG-GCCGG- -5'
5276 5' -52.7 NC_001798.1 + 97628 0.66 0.977284
Target:  5'- cAUCGCGAcgcgggccgccgcGGACGuGCGGgagcGCCGGCg -3'
miRNA:   3'- -UAGUGCU-------------UCUGCcCGUUau--UGGCCGg -5'
5276 5' -52.7 NC_001798.1 + 4895 0.66 0.975002
Target:  5'- gAUC-CGGAGAUccgGGGCc---GCCGGUCg -3'
miRNA:   3'- -UAGuGCUUCUG---CCCGuuauUGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 79377 0.66 0.975002
Target:  5'- --gGCGGccAGACGGGCGcgGGCgCGGaguCCg -3'
miRNA:   3'- uagUGCU--UCUGCCCGUuaUUG-GCC---GG- -5'
5276 5' -52.7 NC_001798.1 + 84992 0.66 0.975002
Target:  5'- uUCGCGGAcGCGuGCGccccgcucGACCGGCCa -3'
miRNA:   3'- uAGUGCUUcUGCcCGUua------UUGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 16181 0.66 0.975002
Target:  5'- -cCGCGggGAcCGGGgGGacgcACgGGCCg -3'
miRNA:   3'- uaGUGCuuCU-GCCCgUUau--UGgCCGG- -5'
5276 5' -52.7 NC_001798.1 + 122230 0.66 0.975002
Target:  5'- -cCGCGGGugggaagcucuGGCcGGCGGcGACCGGCCc -3'
miRNA:   3'- uaGUGCUU-----------CUGcCCGUUaUUGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 153682 0.66 0.975002
Target:  5'- --gGCGggGACgcggGGGCcgccGCCGGCg -3'
miRNA:   3'- uagUGCuuCUG----CCCGuuauUGGCCGg -5'
5276 5' -52.7 NC_001798.1 + 128243 0.66 0.973391
Target:  5'- uGUCGCuGGAGGCGGccggcaugguggaccGCGGgcucGGCCGGCa -3'
miRNA:   3'- -UAGUG-CUUCUGCC---------------CGUUa---UUGGCCGg -5'
5276 5' -52.7 NC_001798.1 + 129307 0.66 0.973391
Target:  5'- -gCGCGGAGGaGGGCG-UGACguuccgccuggaggaCGGCCg -3'
miRNA:   3'- uaGUGCUUCUgCCCGUuAUUG---------------GCCGG- -5'
5276 5' -52.7 NC_001798.1 + 27549 0.66 0.97054
Target:  5'- -gCGCGggGggaggggcggcgcccGCGGGgGAgcgGCCGGCUc -3'
miRNA:   3'- uaGUGCuuC---------------UGCCCgUUau-UGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 152899 0.66 0.969341
Target:  5'- -cCGCGA--GCGGGaac--GCCGGCCc -3'
miRNA:   3'- uaGUGCUucUGCCCguuauUGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 135998 0.66 0.969341
Target:  5'- uGUCcCGggGGCGGGgAGUcggUCGGCg -3'
miRNA:   3'- -UAGuGCuuCUGCCCgUUAuu-GGCCGg -5'
5276 5' -52.7 NC_001798.1 + 127004 0.66 0.969341
Target:  5'- --uGCGAucGGACGcGGUGucgcuccGGCCGGCCg -3'
miRNA:   3'- uagUGCU--UCUGC-CCGUua-----UUGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.