miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5279 3' -54 NC_001798.1 + 39946 0.66 0.958449
Target:  5'- cCGUCuCCGC---AGGGGUCUUcCAUGu -3'
miRNA:   3'- cGUAG-GGCGguuUCCCCAGAAcGUAC- -5'
5279 3' -54 NC_001798.1 + 26000 0.66 0.953783
Target:  5'- gGCcUCCgGCCGcguguucgggccGGGGGUCUUcgcgcGCGUGg -3'
miRNA:   3'- -CGuAGGgCGGUu-----------UCCCCAGAA-----CGUAC- -5'
5279 3' -54 NC_001798.1 + 4177 0.66 0.947907
Target:  5'- uCGUCCgCGCCGAGGGucccgcccgcggcguGGUCUgcgGCGcUGg -3'
miRNA:   3'- cGUAGG-GCGGUUUCC---------------CCAGAa--CGU-AC- -5'
5279 3' -54 NC_001798.1 + 3373 0.66 0.946142
Target:  5'- gGCGUCgCCGCCGucgucGGGGGUUc-GCGc- -3'
miRNA:   3'- -CGUAG-GGCGGUu----UCCCCAGaaCGUac -5'
5279 3' -54 NC_001798.1 + 41460 0.66 0.941558
Target:  5'- ---cCCCGCCGGGGGGGgcggucgGCGg- -3'
miRNA:   3'- cguaGGGCGGUUUCCCCagaa---CGUac -5'
5279 3' -54 NC_001798.1 + 79977 0.66 0.941558
Target:  5'- cGCGUCcgCCGCCGGgcccccGGGGGUCccaGCGc- -3'
miRNA:   3'- -CGUAG--GGCGGUU------UCCCCAGaa-CGUac -5'
5279 3' -54 NC_001798.1 + 33129 0.67 0.936728
Target:  5'- uGCAgcuccCCCGCgCAGGGGGGcCggGgAUGg -3'
miRNA:   3'- -CGUa----GGGCG-GUUUCCCCaGaaCgUAC- -5'
5279 3' -54 NC_001798.1 + 59650 0.67 0.936728
Target:  5'- cGUAUCUCGCggaGAGGGGGggcgacucggCUcGCGUGg -3'
miRNA:   3'- -CGUAGGGCGg--UUUCCCCa---------GAaCGUAC- -5'
5279 3' -54 NC_001798.1 + 68962 0.67 0.931652
Target:  5'- cGCGUCCCGCCGuAGuuGGUCgUGaUGUGg -3'
miRNA:   3'- -CGUAGGGCGGUuUCc-CCAGaAC-GUAC- -5'
5279 3' -54 NC_001798.1 + 47206 0.67 0.93113
Target:  5'- aGCcugagCCCGCCcuguuggGAAGGGGUgg-GCGUGu -3'
miRNA:   3'- -CGua---GGGCGG-------UUUCCCCAgaaCGUAC- -5'
5279 3' -54 NC_001798.1 + 27058 0.67 0.926327
Target:  5'- cGCG-CCCGC--GGGGGGUCUgggGCu-- -3'
miRNA:   3'- -CGUaGGGCGguUUCCCCAGAa--CGuac -5'
5279 3' -54 NC_001798.1 + 43534 0.67 0.926327
Target:  5'- cGCGucUCCCGCCAGggcgguuucccuGGGGGUgacguUUUGCu-- -3'
miRNA:   3'- -CGU--AGGGCGGUU------------UCCCCA-----GAACGuac -5'
5279 3' -54 NC_001798.1 + 151364 0.67 0.920754
Target:  5'- cUAUCagguaCGCCAccGGGGUgUUGCAc- -3'
miRNA:   3'- cGUAGg----GCGGUuuCCCCAgAACGUac -5'
5279 3' -54 NC_001798.1 + 60868 0.67 0.908864
Target:  5'- cGCGUCCU-CCGAAGGGGggcgGCGg- -3'
miRNA:   3'- -CGUAGGGcGGUUUCCCCagaaCGUac -5'
5279 3' -54 NC_001798.1 + 110525 0.68 0.889201
Target:  5'- cGCGUCCgCGCU--GGGGGUCgu-UAUGa -3'
miRNA:   3'- -CGUAGG-GCGGuuUCCCCAGaacGUAC- -5'
5279 3' -54 NC_001798.1 + 55001 0.68 0.889201
Target:  5'- gGCGUCuuGCCGgcGGGGcCgcccUGCcgGg -3'
miRNA:   3'- -CGUAGggCGGUuuCCCCaGa---ACGuaC- -5'
5279 3' -54 NC_001798.1 + 135781 0.68 0.882172
Target:  5'- cGCcggCCCGCCGGAGGaGGcCgugUGCGc- -3'
miRNA:   3'- -CGua-GGGCGGUUUCC-CCaGa--ACGUac -5'
5279 3' -54 NC_001798.1 + 132682 0.69 0.865137
Target:  5'- cGCGUCgCaCGCCGAcgcggcgcaggcgcGGGGGUCgcGCAUc -3'
miRNA:   3'- -CGUAG-G-GCGGUU--------------UCCCCAGaaCGUAc -5'
5279 3' -54 NC_001798.1 + 124496 0.69 0.85972
Target:  5'- ---cCCCGCCAuggcGGGGGGggggCUgcggGCGUGu -3'
miRNA:   3'- cguaGGGCGGU----UUCCCCa---GAa---CGUAC- -5'
5279 3' -54 NC_001798.1 + 36134 0.69 0.851801
Target:  5'- cGCgAUCCCGCCGGuGGGG-CgcgGCGg- -3'
miRNA:   3'- -CG-UAGGGCGGUUuCCCCaGaa-CGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.