miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5279 5' -51 NC_001798.1 + 142487 0.66 0.992903
Target:  5'- gGCccCCGAGGCgg-CGCgggGGUGCGa -3'
miRNA:   3'- aCGcaGGUUUCGaaaGCGa--CUACGCg -5'
5279 5' -51 NC_001798.1 + 11398 0.66 0.991825
Target:  5'- gGCGggCCAuGGCcgccUCGUUGAccGCGCa -3'
miRNA:   3'- aCGCa-GGUuUCGaa--AGCGACUa-CGCG- -5'
5279 5' -51 NC_001798.1 + 72913 0.66 0.991825
Target:  5'- cUGCagaCGGAGCgcgCGCUGGUcgugGCGCg -3'
miRNA:   3'- -ACGcagGUUUCGaaaGCGACUA----CGCG- -5'
5279 5' -51 NC_001798.1 + 31608 0.66 0.991825
Target:  5'- cGCGUCCGGAGUc--CGCccc-GCGCc -3'
miRNA:   3'- aCGCAGGUUUCGaaaGCGacuaCGCG- -5'
5279 5' -51 NC_001798.1 + 94519 0.66 0.991825
Target:  5'- cGCGUCaAGAGCcgcguguugUUCGCgg--GCGCg -3'
miRNA:   3'- aCGCAGgUUUCGa--------AAGCGacuaCGCG- -5'
5279 5' -51 NC_001798.1 + 154046 0.66 0.991825
Target:  5'- cGCG-CCGGGGCgcggcacgGCUGGaGCGCc -3'
miRNA:   3'- aCGCaGGUUUCGaaag----CGACUaCGCG- -5'
5279 5' -51 NC_001798.1 + 47656 0.66 0.990622
Target:  5'- cGCGacgacuUCCGccGCgg-CGCUGGcccgaUGCGCg -3'
miRNA:   3'- aCGC------AGGUuuCGaaaGCGACU-----ACGCG- -5'
5279 5' -51 NC_001798.1 + 135257 0.66 0.990622
Target:  5'- gGCGggCCuggaAAGGCUggacgCGCUGGUG-GCg -3'
miRNA:   3'- aCGCa-GG----UUUCGAaa---GCGACUACgCG- -5'
5279 5' -51 NC_001798.1 + 6830 0.66 0.990622
Target:  5'- cUGCGgugaccgacCCGGAGCUccCGCUGcUGUGUc -3'
miRNA:   3'- -ACGCa--------GGUUUCGAaaGCGACuACGCG- -5'
5279 5' -51 NC_001798.1 + 19822 0.66 0.989283
Target:  5'- cGCGuUCUggGGCUUcCGU---UGCGCg -3'
miRNA:   3'- aCGC-AGGuuUCGAAaGCGacuACGCG- -5'
5279 5' -51 NC_001798.1 + 60250 0.66 0.989283
Target:  5'- gGCGg-CAAAGgUgaCGCaGGUGCGCg -3'
miRNA:   3'- aCGCagGUUUCgAaaGCGaCUACGCG- -5'
5279 5' -51 NC_001798.1 + 91085 0.66 0.989283
Target:  5'- cGCGcCgGAGGCggccgUCGUggaccccGGUGCGCu -3'
miRNA:   3'- aCGCaGgUUUCGaa---AGCGa------CUACGCG- -5'
5279 5' -51 NC_001798.1 + 65325 0.66 0.988854
Target:  5'- cGCGUCCuuaaacaugaugaaGGGGCUUcCGgUGGUggccGCGCu -3'
miRNA:   3'- aCGCAGG--------------UUUCGAAaGCgACUA----CGCG- -5'
5279 5' -51 NC_001798.1 + 56088 0.66 0.9878
Target:  5'- gGCGUuuGGAGCccaCGCggcGUGCGCc -3'
miRNA:   3'- aCGCAggUUUCGaaaGCGac-UACGCG- -5'
5279 5' -51 NC_001798.1 + 77729 0.66 0.9878
Target:  5'- gGCGU-CGAGGCgg-CGCUGGaccGCGUc -3'
miRNA:   3'- aCGCAgGUUUCGaaaGCGACUa--CGCG- -5'
5279 5' -51 NC_001798.1 + 97223 0.66 0.9878
Target:  5'- cGCGguggCCGugGAGCUggCGCUGuucggGCGg -3'
miRNA:   3'- aCGCa---GGU--UUCGAaaGCGACua---CGCg -5'
5279 5' -51 NC_001798.1 + 97799 0.66 0.9878
Target:  5'- cGCGgugCCAAcGGC-UUCGCg---GCGCg -3'
miRNA:   3'- aCGCa--GGUU-UCGaAAGCGacuaCGCG- -5'
5279 5' -51 NC_001798.1 + 138262 0.67 0.984363
Target:  5'- -uCGUCCAAguaGGCgcguaccgugUCGUUGAUGuCGCc -3'
miRNA:   3'- acGCAGGUU---UCGaa--------AGCGACUAC-GCG- -5'
5279 5' -51 NC_001798.1 + 71108 0.67 0.982391
Target:  5'- cGCGcccCCGGGGa---CGCUGAUGgCGCg -3'
miRNA:   3'- aCGCa--GGUUUCgaaaGCGACUAC-GCG- -5'
5279 5' -51 NC_001798.1 + 96330 0.67 0.980236
Target:  5'- cGCGcUCCAGGuGCgcgUGCUGcgGCGg -3'
miRNA:   3'- aCGC-AGGUUU-CGaaaGCGACuaCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.