miRNA display CGI


Results 1 - 20 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5280 3' -61 NC_001798.1 + 39152 1.1 0.000947
Target:  5'- uAGAGGCUCGGGCCGUGAGCGACCAGGg -3'
miRNA:   3'- -UCUCCGAGCCCGGCACUCGCUGGUCC- -5'
5280 3' -61 NC_001798.1 + 146287 0.82 0.08983
Target:  5'- gAGAGGCcgagCGGGgaGUGGGCGGCCGGGc -3'
miRNA:   3'- -UCUCCGa---GCCCggCACUCGCUGGUCC- -5'
5280 3' -61 NC_001798.1 + 6362 0.77 0.189333
Target:  5'- cGGGGGgaCGGGCCGgggggccGGGgGGCCGGGg -3'
miRNA:   3'- -UCUCCgaGCCCGGCa------CUCgCUGGUCC- -5'
5280 3' -61 NC_001798.1 + 28823 0.76 0.208312
Target:  5'- -cGGGCcCGGGCCGUcGGGCGGuCUAGGg -3'
miRNA:   3'- ucUCCGaGCCCGGCA-CUCGCU-GGUCC- -5'
5280 3' -61 NC_001798.1 + 6577 0.76 0.218404
Target:  5'- cGGGGGgaCGGGCCG-GGGgGACgGGGg -3'
miRNA:   3'- -UCUCCgaGCCCGGCaCUCgCUGgUCC- -5'
5280 3' -61 NC_001798.1 + 6535 0.76 0.218404
Target:  5'- cGGGGGgaCGGGCCG-GGGgGACgGGGg -3'
miRNA:   3'- -UCUCCgaGCCCGGCaCUCgCUGgUCC- -5'
5280 3' -61 NC_001798.1 + 6258 0.76 0.223605
Target:  5'- cGGGGGgaCGGGCCGggGGGacgGGCCGGGg -3'
miRNA:   3'- -UCUCCgaGCCCGGCa-CUCg--CUGGUCC- -5'
5280 3' -61 NC_001798.1 + 6297 0.76 0.223605
Target:  5'- cGGGGGgaCGGGCCGggGGGacgGGCCGGGg -3'
miRNA:   3'- -UCUCCgaGCCCGGCa-CUCg--CUGGUCC- -5'
5280 3' -61 NC_001798.1 + 34734 0.75 0.234323
Target:  5'- cGAGGgUCGGGcCCGggagcgGGGCGGCCcGGGa -3'
miRNA:   3'- uCUCCgAGCCC-GGCa-----CUCGCUGG-UCC- -5'
5280 3' -61 NC_001798.1 + 6619 0.74 0.269077
Target:  5'- cGGGGGgaCGGGCCG-GGGgGACgGGGc -3'
miRNA:   3'- -UCUCCgaGCCCGGCaCUCgCUGgUCC- -5'
5280 3' -61 NC_001798.1 + 43674 0.74 0.281552
Target:  5'- cGGGGCUgGGGUCGUGGGUGGUCAcGGc -3'
miRNA:   3'- uCUCCGAgCCCGGCACUCGCUGGU-CC- -5'
5280 3' -61 NC_001798.1 + 30941 0.74 0.281552
Target:  5'- cGGGGgUCGGGCgGgGGGCGGgCGGGg -3'
miRNA:   3'- uCUCCgAGCCCGgCaCUCGCUgGUCC- -5'
5280 3' -61 NC_001798.1 + 151614 0.73 0.30787
Target:  5'- cGGGGGC-CGGGCCGgGGGCGuggccgcguccAUCAGGc -3'
miRNA:   3'- -UCUCCGaGCCCGGCaCUCGC-----------UGGUCC- -5'
5280 3' -61 NC_001798.1 + 53229 0.73 0.343353
Target:  5'- gAGGGGCUCcucagcgcGGCCGUGGGCGuCCugcGGc -3'
miRNA:   3'- -UCUCCGAGc-------CCGGCACUCGCuGGu--CC- -5'
5280 3' -61 NC_001798.1 + 97470 0.72 0.350794
Target:  5'- --cGGCUgGgGGCCGgcgGcGCGACCGGGg -3'
miRNA:   3'- ucuCCGAgC-CCGGCa--CuCGCUGGUCC- -5'
5280 3' -61 NC_001798.1 + 2228 0.72 0.350794
Target:  5'- cGAGGCgcgcagCGGGCCGaaggcggcGGGCGcgccGCCGGGg -3'
miRNA:   3'- uCUCCGa-----GCCCGGCa-------CUCGC----UGGUCC- -5'
5280 3' -61 NC_001798.1 + 4088 0.72 0.353802
Target:  5'- cGGGGGUcCGGGCCGgggcgggcucggcccUGGGCGggcucgGCCGGGg -3'
miRNA:   3'- -UCUCCGaGCCCGGC---------------ACUCGC------UGGUCC- -5'
5280 3' -61 NC_001798.1 + 48679 0.72 0.373796
Target:  5'- cGGGGgaCGGGCCGcccgGAGCGGugGGGa -3'
miRNA:   3'- uCUCCgaGCCCGGCa---CUCGCUggUCC- -5'
5280 3' -61 NC_001798.1 + 23638 0.72 0.373796
Target:  5'- --cGGCgaccgCGGGCCGccugGAGCGccGCCGGGc -3'
miRNA:   3'- ucuCCGa----GCCCGGCa---CUCGC--UGGUCC- -5'
5280 3' -61 NC_001798.1 + 90395 0.72 0.3801
Target:  5'- gGGGGGCgcggUUGGGCCGgcgcguucccGCGGCCGGGc -3'
miRNA:   3'- -UCUCCG----AGCCCGGCacu-------CGCUGGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.