miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5280 3' -61 NC_001798.1 + 41851 0.66 0.686055
Target:  5'- gAGAGGCUUugguucaGGGCgcc--GCGGCCGGGg -3'
miRNA:   3'- -UCUCCGAG-------CCCGgcacuCGCUGGUCC- -5'
5280 3' -61 NC_001798.1 + 122079 0.67 0.677288
Target:  5'- cGGAGGCggugcuggCGGGCCuG-GAGCcGCCcGGc -3'
miRNA:   3'- -UCUCCGa-------GCCCGG-CaCUCGcUGGuCC- -5'
5280 3' -61 NC_001798.1 + 599 0.67 0.677288
Target:  5'- gGGGGGCUCGGGCCaccUGAccuucguaaccuGC-ACuCAGGu -3'
miRNA:   3'- -UCUCCGAGCCCGGc--ACU------------CGcUG-GUCC- -5'
5280 3' -61 NC_001798.1 + 43035 0.67 0.677288
Target:  5'- cGGGGCccCGGGCgcaaaugcggcgCGUGAGCcGCCGGc -3'
miRNA:   3'- uCUCCGa-GCCCG------------GCACUCGcUGGUCc -5'
5280 3' -61 NC_001798.1 + 68181 0.67 0.677288
Target:  5'- aGGucGCUCGGGU--UGGGCGGCCGu- -3'
miRNA:   3'- -UCucCGAGCCCGgcACUCGCUGGUcc -5'
5280 3' -61 NC_001798.1 + 85278 0.67 0.677288
Target:  5'- cGAGGCuUCGGGg---GGGCGgggGCCGGGg -3'
miRNA:   3'- uCUCCG-AGCCCggcaCUCGC---UGGUCC- -5'
5280 3' -61 NC_001798.1 + 150569 0.67 0.677288
Target:  5'- cGGGGCccgCGGGgCGgcgcgGAGaCGGCgGGGg -3'
miRNA:   3'- uCUCCGa--GCCCgGCa----CUC-GCUGgUCC- -5'
5280 3' -61 NC_001798.1 + 27220 0.67 0.677288
Target:  5'- cGGGGCg-GGGCgCGgggGAgGCGGCCGcGGg -3'
miRNA:   3'- uCUCCGagCCCG-GCa--CU-CGCUGGU-CC- -5'
5280 3' -61 NC_001798.1 + 102641 0.67 0.677288
Target:  5'- cGucGC-CGGGCgGcgGAGgGGCCGGGg -3'
miRNA:   3'- uCucCGaGCCCGgCa-CUCgCUGGUCC- -5'
5280 3' -61 NC_001798.1 + 9719 0.67 0.667515
Target:  5'- -cGGGCUCGGGCU---GGCG-CUGGGg -3'
miRNA:   3'- ucUCCGAGCCCGGcacUCGCuGGUCC- -5'
5280 3' -61 NC_001798.1 + 88040 0.67 0.667515
Target:  5'- gGGAGGgcaGGGCCGcUGGGgGGgCGGGc -3'
miRNA:   3'- -UCUCCgagCCCGGC-ACUCgCUgGUCC- -5'
5280 3' -61 NC_001798.1 + 11230 0.67 0.667515
Target:  5'- gGGGGGCcgUCGGGCCacUGcGgGGCCgAGGa -3'
miRNA:   3'- -UCUCCG--AGCCCGGc-ACuCgCUGG-UCC- -5'
5280 3' -61 NC_001798.1 + 97597 0.67 0.667515
Target:  5'- cAGGGGCgcagGGGCCGgagagcugGGGCGACaucgcgacgCGGGc -3'
miRNA:   3'- -UCUCCGag--CCCGGCa-------CUCGCUG---------GUCC- -5'
5280 3' -61 NC_001798.1 + 45394 0.67 0.657715
Target:  5'- --cGGCUCuGGCCG-GAGgGACCcgcaccgcGGGg -3'
miRNA:   3'- ucuCCGAGcCCGGCaCUCgCUGG--------UCC- -5'
5280 3' -61 NC_001798.1 + 135792 0.67 0.657715
Target:  5'- cGGAGGa---GGCCGUGugcGCGGCCcGGGg -3'
miRNA:   3'- -UCUCCgagcCCGGCACu--CGCUGG-UCC- -5'
5280 3' -61 NC_001798.1 + 74528 0.67 0.647896
Target:  5'- gGGGGGCUCGGGgCGcucuuugucgGuGUGGuccCCAGGg -3'
miRNA:   3'- -UCUCCGAGCCCgGCa---------CuCGCU---GGUCC- -5'
5280 3' -61 NC_001798.1 + 122134 0.67 0.647896
Target:  5'- gGGGGGCcccCGGGCCGcGGGCGA---GGa -3'
miRNA:   3'- -UCUCCGa--GCCCGGCaCUCGCUgguCC- -5'
5280 3' -61 NC_001798.1 + 154051 0.67 0.647896
Target:  5'- cGGGGCgCGgcacGGCUG-GAGCG-CCGGGg -3'
miRNA:   3'- uCUCCGaGC----CCGGCaCUCGCuGGUCC- -5'
5280 3' -61 NC_001798.1 + 143758 0.67 0.645931
Target:  5'- cGAGGgUCGGGCCuGaucgcguucugggcaUGGGCgccccagagcauaaaGACCAGGc -3'
miRNA:   3'- uCUCCgAGCCCGG-C---------------ACUCG---------------CUGGUCC- -5'
5280 3' -61 NC_001798.1 + 30770 0.67 0.638066
Target:  5'- cGAGGCggccgugCGGGCCGgca-CGGCCGuGGa -3'
miRNA:   3'- uCUCCGa------GCCCGGCacucGCUGGU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.