miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5280 5' -56.4 NC_001798.1 + 153085 0.66 0.889573
Target:  5'- ---gCGGCGGGg--CGGCGcCGGGCCc -3'
miRNA:   3'- uuggGCUGCCCagaGCCGCaGUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 15846 0.66 0.889573
Target:  5'- gGGCCCGAacguCGGGgucgaccccCUCGGgGUCuguCCg -3'
miRNA:   3'- -UUGGGCU----GCCCa--------GAGCCgCAGuuuGG- -5'
5280 5' -56.4 NC_001798.1 + 108835 0.67 0.885515
Target:  5'- uGGCCCGugGGcGUCUggacgacgggcgggcUGGCGUUcgGGugCg -3'
miRNA:   3'- -UUGGGCugCC-CAGA---------------GCCGCAG--UUugG- -5'
5280 5' -56.4 NC_001798.1 + 58120 0.67 0.882766
Target:  5'- gGGCCCGGCgucuGGGUCcuugugaaggCGGCGcCgGAGCCc -3'
miRNA:   3'- -UUGGGCUG----CCCAGa---------GCCGCaG-UUUGG- -5'
5280 5' -56.4 NC_001798.1 + 145914 0.67 0.882766
Target:  5'- --aCCGGCGGGaUCgCGGCGagAcgcAGCCg -3'
miRNA:   3'- uugGGCUGCCC-AGaGCCGCagU---UUGG- -5'
5280 5' -56.4 NC_001798.1 + 147202 0.67 0.882766
Target:  5'- cGCCCGGC-GGUC-CGGCc-CGGGCCc -3'
miRNA:   3'- uUGGGCUGcCCAGaGCCGcaGUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 103275 0.67 0.882073
Target:  5'- -uCCCGggagagcGCGGGUCcgCGGCGcUCAAAa- -3'
miRNA:   3'- uuGGGC-------UGCCCAGa-GCCGC-AGUUUgg -5'
5280 5' -56.4 NC_001798.1 + 62275 0.67 0.875742
Target:  5'- aGGCCCGcCGGGcggCcCGGCGggagCGcGCCa -3'
miRNA:   3'- -UUGGGCuGCCCa--GaGCCGCa---GUuUGG- -5'
5280 5' -56.4 NC_001798.1 + 115837 0.67 0.868504
Target:  5'- cGCCCGGggccUGGaG-CUCGGCGUUGGccGCCa -3'
miRNA:   3'- uUGGGCU----GCC-CaGAGCCGCAGUU--UGG- -5'
5280 5' -56.4 NC_001798.1 + 42213 0.67 0.861059
Target:  5'- aAGCgCCG-CGGGUCggcgugcgCGGCGaCGAACg -3'
miRNA:   3'- -UUG-GGCuGCCCAGa-------GCCGCaGUUUGg -5'
5280 5' -56.4 NC_001798.1 + 66825 0.67 0.861059
Target:  5'- gAGCCCGGCccGGUgC-CGGCGccCAGGCCg -3'
miRNA:   3'- -UUGGGCUGc-CCA-GaGCCGCa-GUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 122106 0.67 0.861059
Target:  5'- cGCCCGGCGGGg---GGCG-CuuuGCCa -3'
miRNA:   3'- uUGGGCUGCCCagagCCGCaGuu-UGG- -5'
5280 5' -56.4 NC_001798.1 + 100187 0.67 0.860303
Target:  5'- --gCCGGCGGGUgagcgcgcgcaugCUCGGagaCGUCAuGGCCg -3'
miRNA:   3'- uugGGCUGCCCA-------------GAGCC---GCAGU-UUGG- -5'
5280 5' -56.4 NC_001798.1 + 146584 0.67 0.853411
Target:  5'- gGGCCagcaGACGGGcCgCGGCGcCAGcgGCCc -3'
miRNA:   3'- -UUGGg---CUGCCCaGaGCCGCaGUU--UGG- -5'
5280 5' -56.4 NC_001798.1 + 19055 0.67 0.853411
Target:  5'- cACCUGugGguGGUCggGGCGgCGGACCu -3'
miRNA:   3'- uUGGGCugC--CCAGagCCGCaGUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 154134 0.67 0.851079
Target:  5'- gGACCCcggcggcgggacauGGCGGGcggcugggCUCGGCGU-AGGCCc -3'
miRNA:   3'- -UUGGG--------------CUGCCCa-------GAGCCGCAgUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 39624 0.67 0.845568
Target:  5'- cGCgCCGGCgGGGUUUUGGUGUgGAgucggcGCCg -3'
miRNA:   3'- uUG-GGCUG-CCCAGAGCCGCAgUU------UGG- -5'
5280 5' -56.4 NC_001798.1 + 135530 0.67 0.845568
Target:  5'- cGCCCGcCGGGccCUCgaGGCGUCcGugCg -3'
miRNA:   3'- uUGGGCuGCCCa-GAG--CCGCAGuUugG- -5'
5280 5' -56.4 NC_001798.1 + 90851 0.67 0.845568
Target:  5'- -uCCCGGCGGG-CgugaUGGCGUCcauAAAUCg -3'
miRNA:   3'- uuGGGCUGCCCaGa---GCCGCAG---UUUGG- -5'
5280 5' -56.4 NC_001798.1 + 26518 0.67 0.844773
Target:  5'- uGGCCgCGGCGGG-CggCGGCGUgGAggugguggggaccGCCg -3'
miRNA:   3'- -UUGG-GCUGCCCaGa-GCCGCAgUU-------------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.