miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5282 3' -55.7 NC_001798.1 + 6336 0.67 0.869017
Target:  5'- cGGggGGAcGGGcCGGGGGGAcggGcCGGGGGg -3'
miRNA:   3'- -CUuaCCU-UCC-GCUCCCCUa--C-GUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 72 0.67 0.869017
Target:  5'- gGGcgGcGgcGGCGGGcGGGcgGCAGGGc -3'
miRNA:   3'- -CUuaC-CuuCCGCUC-CCCuaCGUCCUc -5'
5282 3' -55.7 NC_001798.1 + 154410 0.67 0.869017
Target:  5'- gGGcgGcGgcGGCGGGcGGGcgGCAGGGc -3'
miRNA:   3'- -CUuaC-CuuCCGCUC-CCCuaCGUCCUc -5'
5282 3' -55.7 NC_001798.1 + 6255 0.67 0.861429
Target:  5'- nGAcgGGGggacGGGcCGGGGGGAcggGcCGGGGGg -3'
miRNA:   3'- -CUuaCCU----UCC-GCUCCCCUa--C-GUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 57464 0.67 0.861429
Target:  5'- --uUGGggGGCGGGGccGGuuuggcGguGGAGg -3'
miRNA:   3'- cuuACCuuCCGCUCC--CCua----CguCCUC- -5'
5282 3' -55.7 NC_001798.1 + 26819 0.67 0.845627
Target:  5'- gGGcgGGGgucGGGCGGGcGGGGgucgggcggGCGGGGGu -3'
miRNA:   3'- -CUuaCCU---UCCGCUC-CCCUa--------CGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 26864 0.67 0.845627
Target:  5'- gGGcgGGGgucGGGCGGGcGGGGgucgggcggGCGGGGGu -3'
miRNA:   3'- -CUuaCCU---UCCGCUC-CCCUa--------CGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 26983 0.67 0.845627
Target:  5'- gGGcgGGGgucGGGCGGGcGGGGgucgggcggGCGGGGGu -3'
miRNA:   3'- -CUuaCCU---UCCGCUC-CCCUa--------CGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 57542 0.68 0.837426
Target:  5'- ---cGGggGGCGGaugcguuccgcGGGGAcGCGGaGGGg -3'
miRNA:   3'- cuuaCCuuCCGCU-----------CCCCUaCGUC-CUC- -5'
5282 3' -55.7 NC_001798.1 + 61162 0.68 0.837426
Target:  5'- ---gGGAGGGgGAGGGGggGaAGaGAGa -3'
miRNA:   3'- cuuaCCUUCCgCUCCCCuaCgUC-CUC- -5'
5282 3' -55.7 NC_001798.1 + 36828 0.68 0.834929
Target:  5'- uAGUGGucGGCGuGGGGAccgGCugugugguggguggGGGAGg -3'
miRNA:   3'- cUUACCuuCCGCuCCCCUa--CG--------------UCCUC- -5'
5282 3' -55.7 NC_001798.1 + 6375 0.68 0.829035
Target:  5'- ---cGGggGGcCGGGGGGc--CGGGGGg -3'
miRNA:   3'- cuuaCCuuCC-GCUCCCCuacGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 101868 0.68 0.820461
Target:  5'- ---cGGAGGG-GGGuGGGcguGUGCGGGGGa -3'
miRNA:   3'- cuuaCCUUCCgCUC-CCC---UACGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 93978 0.68 0.819594
Target:  5'- -cGUGGAccAGGCGGugcccacggcccuGGGGAgGCuGGAGa -3'
miRNA:   3'- cuUACCU--UCCGCU-------------CCCCUaCGuCCUC- -5'
5282 3' -55.7 NC_001798.1 + 26939 0.68 0.811713
Target:  5'- gGGcgGGGucGGGCGGGcGGGGgucgggcggGCGGGGGu -3'
miRNA:   3'- -CUuaCCU--UCCGCUC-CCCUa--------CGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 95947 0.68 0.811713
Target:  5'- gGAggGGggGGUGAGGaagaaagaacGGAUuCGGGGGg -3'
miRNA:   3'- -CUuaCCuuCCGCUCC----------CCUAcGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 9671 0.68 0.802798
Target:  5'- ---cGGAGGGCGc-GGGAUGgGGGGc -3'
miRNA:   3'- cuuaCCUUCCGCucCCCUACgUCCUc -5'
5282 3' -55.7 NC_001798.1 + 33168 0.68 0.802798
Target:  5'- ---aGGGAGGaggagGAGGGGggGCGGGc- -3'
miRNA:   3'- cuuaCCUUCCg----CUCCCCuaCGUCCuc -5'
5282 3' -55.7 NC_001798.1 + 5249 0.68 0.801898
Target:  5'- ---cGGGgcgcgcgGGGCGGGGGGAaaGgAGGAGg -3'
miRNA:   3'- cuuaCCU-------UCCGCUCCCCUa-CgUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 55993 0.69 0.784505
Target:  5'- ---cGcGggGGCGAGGGGcugGUAGGcGGg -3'
miRNA:   3'- cuuaC-CuuCCGCUCCCCua-CGUCC-UC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.