miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5283 5' -52 NC_001798.1 + 11175 0.66 0.985037
Target:  5'- cGAUGGGGgcGGUGgGGCGGGccUGCCg -3'
miRNA:   3'- -CUGUCCCuaCUGCgUCGUCUuuACGG- -5'
5283 5' -52 NC_001798.1 + 43219 0.66 0.985037
Target:  5'- gGGCAGGGGgguuuggaccGACGCGuccuGCAuGAGA-GCCg -3'
miRNA:   3'- -CUGUCCCUa---------CUGCGU----CGU-CUUUaCGG- -5'
5283 5' -52 NC_001798.1 + 74396 0.66 0.985037
Target:  5'- -cCGGGGGccgUGGCGcCGGCGGAccUGaCCg -3'
miRNA:   3'- cuGUCCCU---ACUGC-GUCGUCUuuAC-GG- -5'
5283 5' -52 NC_001798.1 + 113636 0.66 0.98392
Target:  5'- cGCGGccggcgccgccauguGGGUGGCgGCGGCGGAcugcuuUGCCg -3'
miRNA:   3'- cUGUC---------------CCUACUG-CGUCGUCUuu----ACGG- -5'
5283 5' -52 NC_001798.1 + 137814 0.66 0.983141
Target:  5'- cGCGGGGAUGuACuGguGCuGGAAAcuguugGCCa -3'
miRNA:   3'- cUGUCCCUAC-UG-CguCG-UCUUUa-----CGG- -5'
5283 5' -52 NC_001798.1 + 153072 0.66 0.983141
Target:  5'- --uGGGGcgGGCggaGCGGCGGGGcgGCg -3'
miRNA:   3'- cugUCCCuaCUG---CGUCGUCUUuaCGg -5'
5283 5' -52 NC_001798.1 + 38300 0.66 0.983141
Target:  5'- uACGGGGGggcGACGUGGguGAuguccgggGCCc -3'
miRNA:   3'- cUGUCCCUa--CUGCGUCguCUuua-----CGG- -5'
5283 5' -52 NC_001798.1 + 3431 0.66 0.982538
Target:  5'- aGCAGGGGcgcguaGGCGCggcgcaggcuggucAGCAGGAA-GCCc -3'
miRNA:   3'- cUGUCCCUa-----CUGCG--------------UCGUCUUUaCGG- -5'
5283 5' -52 NC_001798.1 + 36515 0.66 0.981069
Target:  5'- gGGCGGGGgcG-CGCGGCGGccggGCg -3'
miRNA:   3'- -CUGUCCCuaCuGCGUCGUCuuuaCGg -5'
5283 5' -52 NC_001798.1 + 44275 0.66 0.981069
Target:  5'- uACAGGGG-GGCGguGCugccgcUGCCg -3'
miRNA:   3'- cUGUCCCUaCUGCguCGucuuu-ACGG- -5'
5283 5' -52 NC_001798.1 + 26504 0.66 0.981069
Target:  5'- cGCGGGGAcggugcUGGcCGCGGCGGGcgGcgGCg -3'
miRNA:   3'- cUGUCCCU------ACU-GCGUCGUCU--UuaCGg -5'
5283 5' -52 NC_001798.1 + 36557 0.66 0.981069
Target:  5'- gGGCGGGGgcG-CGCGGCGGccggGCg -3'
miRNA:   3'- -CUGUCCCuaCuGCGUCGUCuuuaCGg -5'
5283 5' -52 NC_001798.1 + 36599 0.66 0.981069
Target:  5'- gGGCGGGGgcG-CGCGGCGGccggGCg -3'
miRNA:   3'- -CUGUCCCuaCuGCGUCGUCuuuaCGg -5'
5283 5' -52 NC_001798.1 + 28624 0.66 0.978813
Target:  5'- cGACGGGGGUccugGGCGCgcgAGCGG----GCCg -3'
miRNA:   3'- -CUGUCCCUA----CUGCG---UCGUCuuuaCGG- -5'
5283 5' -52 NC_001798.1 + 239 0.66 0.978813
Target:  5'- cGGCAGGacGggGAC-UAGCAGGcuGUGCCg -3'
miRNA:   3'- -CUGUCC--CuaCUGcGUCGUCUu-UACGG- -5'
5283 5' -52 NC_001798.1 + 39450 0.66 0.978813
Target:  5'- -uCAGGGAcaGCGCcaucAGCGGAGGggggGCCu -3'
miRNA:   3'- cuGUCCCUacUGCG----UCGUCUUUa---CGG- -5'
5283 5' -52 NC_001798.1 + 6516 0.66 0.978813
Target:  5'- gGACGGGGG-GACGgGGggaCGGggGgacggGCCg -3'
miRNA:   3'- -CUGUCCCUaCUGCgUC---GUCuuUa----CGG- -5'
5283 5' -52 NC_001798.1 + 6255 0.66 0.978813
Target:  5'- gGACGGGGG-GACGgGcCGGggGgacggGCCg -3'
miRNA:   3'- -CUGUCCCUaCUGCgUcGUCuuUa----CGG- -5'
5283 5' -52 NC_001798.1 + 137472 0.66 0.976363
Target:  5'- cGGCGGGGGUuggggaggggGGcCGgGGCAGAGccgcGUGCUg -3'
miRNA:   3'- -CUGUCCCUA----------CU-GCgUCGUCUU----UACGG- -5'
5283 5' -52 NC_001798.1 + 50076 0.66 0.976363
Target:  5'- gGACGacGAUGACGCuccuGCGGAg--GCCg -3'
miRNA:   3'- -CUGUccCUACUGCGu---CGUCUuuaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.