miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5285 3' -55.3 NC_001798.1 + 116298 0.66 0.919813
Target:  5'- --cCCUggaCCGCCACCgagACUGCCGgauugaCGCg -3'
miRNA:   3'- aaaGGAa--GGCGGUGG---UGAUGGUg-----GUG- -5'
5285 3' -55.3 NC_001798.1 + 2868 0.66 0.919813
Target:  5'- --gCCUcgCUGCCGCCG--GCCACgCGCa -3'
miRNA:   3'- aaaGGAa-GGCGGUGGUgaUGGUG-GUG- -5'
5285 3' -55.3 NC_001798.1 + 113233 0.66 0.913947
Target:  5'- --gUCUUCCGCC-CCAC-ACCcaGCCGg -3'
miRNA:   3'- aaaGGAAGGCGGuGGUGaUGG--UGGUg -5'
5285 3' -55.3 NC_001798.1 + 77994 0.66 0.913947
Target:  5'- gUUCCacgCCGCCGCCGaaACCuacGCCGa -3'
miRNA:   3'- aAAGGaa-GGCGGUGGUgaUGG---UGGUg -5'
5285 3' -55.3 NC_001798.1 + 38498 0.66 0.913947
Target:  5'- --cCCggagucUCCGCC-CCAC--CCGCCGCg -3'
miRNA:   3'- aaaGGa-----AGGCGGuGGUGauGGUGGUG- -5'
5285 3' -55.3 NC_001798.1 + 130445 0.67 0.858381
Target:  5'- -cUCCcgUCUgggcccccgGCCACUGCUGcuCCACCACg -3'
miRNA:   3'- aaAGGa-AGG---------CGGUGGUGAU--GGUGGUG- -5'
5285 3' -55.3 NC_001798.1 + 26067 0.67 0.858381
Target:  5'- --cCCgaCgCGCCGCCGCUgcGCCucuGCCGCg -3'
miRNA:   3'- aaaGGaaG-GCGGUGGUGA--UGG---UGGUG- -5'
5285 3' -55.3 NC_001798.1 + 126882 0.67 0.85042
Target:  5'- --cCCcUCCGUCGCgACggcccuCCACCACu -3'
miRNA:   3'- aaaGGaAGGCGGUGgUGau----GGUGGUG- -5'
5285 3' -55.3 NC_001798.1 + 54627 0.67 0.85042
Target:  5'- --gCCUcCCGCC-CCGCaACC-CCGCg -3'
miRNA:   3'- aaaGGAaGGCGGuGGUGaUGGuGGUG- -5'
5285 3' -55.3 NC_001798.1 + 134523 0.67 0.849612
Target:  5'- -gUCC-UCCGCC-UCGCUcgccgucACCAUCACg -3'
miRNA:   3'- aaAGGaAGGCGGuGGUGA-------UGGUGGUG- -5'
5285 3' -55.3 NC_001798.1 + 128316 0.67 0.842253
Target:  5'- --cCCgUCCGCCGCCGaaGCCGUCGCc -3'
miRNA:   3'- aaaGGaAGGCGGUGGUgaUGGUGGUG- -5'
5285 3' -55.3 NC_001798.1 + 145737 0.67 0.858381
Target:  5'- --cCCgcgccCCGCCGCCACacCCACgGCa -3'
miRNA:   3'- aaaGGaa---GGCGGUGGUGauGGUGgUG- -5'
5285 3' -55.3 NC_001798.1 + 99037 0.67 0.873658
Target:  5'- ----gUUCgGCCACCGCUACUcCCAg -3'
miRNA:   3'- aaaggAAGgCGGUGGUGAUGGuGGUg -5'
5285 3' -55.3 NC_001798.1 + 27896 0.67 0.873658
Target:  5'- --cCCagCCGcCCGCCAUgucCCGCCGCc -3'
miRNA:   3'- aaaGGaaGGC-GGUGGUGau-GGUGGUG- -5'
5285 3' -55.3 NC_001798.1 + 100687 0.67 0.873658
Target:  5'- -aUCCgcgCCGaCGCCAacGCCGCCAUg -3'
miRNA:   3'- aaAGGaa-GGCgGUGGUgaUGGUGGUG- -5'
5285 3' -55.3 NC_001798.1 + 86095 0.67 0.873658
Target:  5'- --cCCggcugCgCGCCGCCGCggacgcCCGCCGCg -3'
miRNA:   3'- aaaGGaa---G-GCGGUGGUGau----GGUGGUG- -5'
5285 3' -55.3 NC_001798.1 + 63046 0.67 0.880962
Target:  5'- gUUCCUUCCcuuuCC-CCA--GCCGCCACc -3'
miRNA:   3'- aAAGGAAGGc---GGuGGUgaUGGUGGUG- -5'
5285 3' -55.3 NC_001798.1 + 70953 0.67 0.880962
Target:  5'- -gUCCcgCCGCCGCUGCUGgC-CCAg -3'
miRNA:   3'- aaAGGaaGGCGGUGGUGAUgGuGGUg -5'
5285 3' -55.3 NC_001798.1 + 123788 0.67 0.880962
Target:  5'- --gCCUUCgGCCACCuggaaGCUGCCuCCc- -3'
miRNA:   3'- aaaGGAAGgCGGUGG-----UGAUGGuGGug -5'
5285 3' -55.3 NC_001798.1 + 58321 0.67 0.842253
Target:  5'- -cUCCgucaggcCCGCCGCCGCgugGCCcCCGa -3'
miRNA:   3'- aaAGGaa-----GGCGGUGGUGa--UGGuGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.