Results 1 - 20 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5285 | 3' | -55.3 | NC_001798.1 | + | 33978 | 1.06 | 0.004246 |
Target: 5'- gUUUCCUUCCGCCACCACUACCACCACc -3' miRNA: 3'- -AAAGGAAGGCGGUGGUGAUGGUGGUG- -5' |
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5285 | 3' | -55.3 | NC_001798.1 | + | 25188 | 0.81 | 0.192373 |
Target: 5'- --gCCgacgCCGCCGCCGCgGCCGCCGCg -3' miRNA: 3'- aaaGGaa--GGCGGUGGUGaUGGUGGUG- -5' |
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5285 | 3' | -55.3 | NC_001798.1 | + | 81694 | 0.81 | 0.212851 |
Target: 5'- uUUUCCggcUCUGCCGCCGCUuucuCCGCCGCc -3' miRNA: 3'- -AAAGGa--AGGCGGUGGUGAu---GGUGGUG- -5' |
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5285 | 3' | -55.3 | NC_001798.1 | + | 24930 | 0.79 | 0.246452 |
Target: 5'- --gCCUgcugagcUCCGCCGCCGC-GCCGCCGCg -3' miRNA: 3'- aaaGGA-------AGGCGGUGGUGaUGGUGGUG- -5' |
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5285 | 3' | -55.3 | NC_001798.1 | + | 83899 | 0.78 | 0.3003 |
Target: 5'- -cUCCggaagaguggugcgCCGCCGCCACcACCACCGCc -3' miRNA: 3'- aaAGGaa------------GGCGGUGGUGaUGGUGGUG- -5' |
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5285 | 3' | -55.3 | NC_001798.1 | + | 3147 | 0.78 | 0.314007 |
Target: 5'- --gCCggCCGCCGCCACcACCGCCGg -3' miRNA: 3'- aaaGGaaGGCGGUGGUGaUGGUGGUg -5' |
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5285 | 3' | -55.3 | NC_001798.1 | + | 31611 | 0.77 | 0.344393 |
Target: 5'- -gUCCggagUCCGCC-CCGCgccGCCGCCGCc -3' miRNA: 3'- aaAGGa---AGGCGGuGGUGa--UGGUGGUG- -5' |
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5285 | 3' | -55.3 | NC_001798.1 | + | 102906 | 0.77 | 0.36036 |
Target: 5'- --gCCUgCCGCCGCCGCU-CgGCCACa -3' miRNA: 3'- aaaGGAaGGCGGUGGUGAuGgUGGUG- -5' |
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5285 | 3' | -55.3 | NC_001798.1 | + | 28288 | 0.75 | 0.429213 |
Target: 5'- --cCCUUCCGCCccaccuggcgcuACgGCUGCgCACCACg -3' miRNA: 3'- aaaGGAAGGCGG------------UGgUGAUG-GUGGUG- -5' |
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5285 | 3' | -55.3 | NC_001798.1 | + | 82015 | 0.75 | 0.438352 |
Target: 5'- ------aCCGCCGCCGCgGCCGCCGCc -3' miRNA: 3'- aaaggaaGGCGGUGGUGaUGGUGGUG- -5' |
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5285 | 3' | -55.3 | NC_001798.1 | + | 58667 | 0.75 | 0.447602 |
Target: 5'- -gUCCcgaggcCCGCCACCACcGCCGCCGu -3' miRNA: 3'- aaAGGaa----GGCGGUGGUGaUGGUGGUg -5' |
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5285 | 3' | -55.3 | NC_001798.1 | + | 136322 | 0.75 | 0.456959 |
Target: 5'- -gUCUUUCCaCCACCAgcACCACCACc -3' miRNA: 3'- aaAGGAAGGcGGUGGUgaUGGUGGUG- -5' |
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5285 | 3' | -55.3 | NC_001798.1 | + | 4950 | 0.74 | 0.475982 |
Target: 5'- -gUCCUcgUCCGCCAUCGCgaccucgGCC-CCGCg -3' miRNA: 3'- aaAGGA--AGGCGGUGGUGa------UGGuGGUG- -5' |
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5285 | 3' | -55.3 | NC_001798.1 | + | 21686 | 0.73 | 0.515149 |
Target: 5'- --cCCUUCgcgaUGCCGCCGCUGCCgucccggucuccGCCGCg -3' miRNA: 3'- aaaGGAAG----GCGGUGGUGAUGG------------UGGUG- -5' |
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5285 | 3' | -55.3 | NC_001798.1 | + | 145599 | 0.73 | 0.53219 |
Target: 5'- cUUCCUUCC-CCGCCGCgaccccgaccccgccCCACCGCc -3' miRNA: 3'- aAAGGAAGGcGGUGGUGau-------------GGUGGUG- -5' |
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5285 | 3' | -55.3 | NC_001798.1 | + | 62165 | 0.73 | 0.545358 |
Target: 5'- gUUCCUggcgcuguucgUCCGCUGCCACacagACCugCACc -3' miRNA: 3'- aAAGGA-----------AGGCGGUGGUGa---UGGugGUG- -5' |
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5285 | 3' | -55.3 | NC_001798.1 | + | 137948 | 0.73 | 0.545358 |
Target: 5'- --cCCggUCCGCCGCgCGCUGCUcCCGCu -3' miRNA: 3'- aaaGGa-AGGCGGUG-GUGAUGGuGGUG- -5' |
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5285 | 3' | -55.3 | NC_001798.1 | + | 28232 | 0.73 | 0.555558 |
Target: 5'- --gCCUgCCGCCGCCugccccccGCcGCCGCCGCg -3' miRNA: 3'- aaaGGAaGGCGGUGG--------UGaUGGUGGUG- -5' |
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5285 | 3' | -55.3 | NC_001798.1 | + | 28809 | 0.72 | 0.576115 |
Target: 5'- -gUCC-UCCGCCGCCGCggGCCcggGCCGu -3' miRNA: 3'- aaAGGaAGGCGGUGGUGa-UGG---UGGUg -5' |
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5285 | 3' | -55.3 | NC_001798.1 | + | 145894 | 0.72 | 0.58646 |
Target: 5'- --cCCgaCCGCCGCCGCgccCCACCGg -3' miRNA: 3'- aaaGGaaGGCGGUGGUGau-GGUGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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