miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5285 5' -60 NC_001798.1 + 79187 0.66 0.784477
Target:  5'- gUGCGCCCGgcUGCGGgauGAGGuggugcgcAGGGu -3'
miRNA:   3'- gGCGCGGGU--GCGCCau-CUCCu-------UCCCc -5'
5285 5' -60 NC_001798.1 + 139550 0.66 0.784477
Target:  5'- gCCGCGCCUGCaGUGGUuccGGGAcguGGcGGc -3'
miRNA:   3'- -GGCGCGGGUG-CGCCAuc-UCCUu--CC-CC- -5'
5285 5' -60 NC_001798.1 + 68118 0.66 0.783597
Target:  5'- gCCGCGCaCgGCcaagacggcgaggGCGGaguuggugugUAGGGGggGGGa -3'
miRNA:   3'- -GGCGCG-GgUG-------------CGCC----------AUCUCCuuCCCc -5'
5285 5' -60 NC_001798.1 + 16218 0.66 0.775622
Target:  5'- aCGCGCCgCcuguggggGgGCGGUGG-GGccGGGGc -3'
miRNA:   3'- gGCGCGG-G--------UgCGCCAUCuCCuuCCCC- -5'
5285 5' -60 NC_001798.1 + 101803 0.66 0.775622
Target:  5'- uCCGCGCCgGgCGCcucgGGUuGGGGuaagcucgcggcGGGGGGa -3'
miRNA:   3'- -GGCGCGGgU-GCG----CCAuCUCC------------UUCCCC- -5'
5285 5' -60 NC_001798.1 + 102463 0.66 0.775622
Target:  5'- cCCGgGUaCGgGUGGgcgGGAGGAGGcGGGu -3'
miRNA:   3'- -GGCgCGgGUgCGCCa--UCUCCUUC-CCC- -5'
5285 5' -60 NC_001798.1 + 71968 0.66 0.774729
Target:  5'- gCUG-GCCCugGUGGUcGGGGAcgcgcugAGGGc -3'
miRNA:   3'- -GGCgCGGGugCGCCAuCUCCU-------UCCCc -5'
5285 5' -60 NC_001798.1 + 33138 0.66 0.766649
Target:  5'- cCCGCGCaggggggcCGgGGauggGGGGGAAGGGa -3'
miRNA:   3'- -GGCGCGggu-----GCgCCa---UCUCCUUCCCc -5'
5285 5' -60 NC_001798.1 + 39434 0.66 0.765745
Target:  5'- uCCGCGUgCGgGgGGgucagGGAcagcgccaucagcGGAGGGGGg -3'
miRNA:   3'- -GGCGCGgGUgCgCCa----UCU-------------CCUUCCCC- -5'
5285 5' -60 NC_001798.1 + 103408 0.66 0.764841
Target:  5'- cCCG-GCCCaccucgcaccgaGCGCGGUGGucuacguugaucGGcAGGGGg -3'
miRNA:   3'- -GGCgCGGG------------UGCGCCAUCu-----------CCuUCCCC- -5'
5285 5' -60 NC_001798.1 + 76727 0.67 0.761212
Target:  5'- gCGCGCCCACGCccUGGAGGcGAugcucaacgacgcgcGGGa -3'
miRNA:   3'- gGCGCGGGUGCGccAUCUCC-UU---------------CCCc -5'
5285 5' -60 NC_001798.1 + 101849 0.67 0.757567
Target:  5'- gCGUGgguCCCG-GCGGcGGcGGAGGGGGg -3'
miRNA:   3'- gGCGC---GGGUgCGCCaUCuCCUUCCCC- -5'
5285 5' -60 NC_001798.1 + 43164 0.67 0.757567
Target:  5'- cCCGCGCCgC-CGCGGcaaacgccUGGccGGucGGGGa -3'
miRNA:   3'- -GGCGCGG-GuGCGCC--------AUCu-CCuuCCCC- -5'
5285 5' -60 NC_001798.1 + 152158 0.67 0.757567
Target:  5'- cCCGCaGCCgG-GUGGUccGGGGAaaAGGGGg -3'
miRNA:   3'- -GGCG-CGGgUgCGCCAu-CUCCU--UCCCC- -5'
5285 5' -60 NC_001798.1 + 139332 0.67 0.757567
Target:  5'- gCCgGCGCCCGCGCGcGcugugcggccaUGGcggcguccggcGGGGAGGGc -3'
miRNA:   3'- -GG-CGCGGGUGCGC-C-----------AUC-----------UCCUUCCCc -5'
5285 5' -60 NC_001798.1 + 33545 0.67 0.757567
Target:  5'- uCUGCcCCCGgGgaCGGgugGGAGGAAGGaGGa -3'
miRNA:   3'- -GGCGcGGGUgC--GCCa--UCUCCUUCC-CC- -5'
5285 5' -60 NC_001798.1 + 74832 0.67 0.754822
Target:  5'- aCGCGgCCGaagaagccgagaccUGCGGguccUGGAGGuGGGGGc -3'
miRNA:   3'- gGCGCgGGU--------------GCGCC----AUCUCCuUCCCC- -5'
5285 5' -60 NC_001798.1 + 133297 0.67 0.753905
Target:  5'- gCGUGCCUGCaGUGGgacucgauggccgGGGGGucGGGGc -3'
miRNA:   3'- gGCGCGGGUG-CGCCa------------UCUCCuuCCCC- -5'
5285 5' -60 NC_001798.1 + 20892 0.67 0.752068
Target:  5'- -gGCGUCUGCGCuuccgugaacccgggGGUGG-GGAuGGGGg -3'
miRNA:   3'- ggCGCGGGUGCG---------------CCAUCuCCUuCCCC- -5'
5285 5' -60 NC_001798.1 + 150902 0.67 0.748383
Target:  5'- gCCGCcCCCGCGcCGGggcgcucuucgGGGGGcGGGcGGg -3'
miRNA:   3'- -GGCGcGGGUGC-GCCa----------UCUCCuUCC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.