miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5286 5' -55.1 NC_001798.1 + 52513 0.66 0.945785
Target:  5'- gACGACGCGgcggccgcGCGCGccgUGCuggcgacGGGGCu -3'
miRNA:   3'- gUGCUGUGC--------UGCGCaaaACG-------CCCCGu -5'
5286 5' -55.1 NC_001798.1 + 58 0.66 0.946224
Target:  5'- gGgGGCGCGAagGCGggcgGCGGcGGCGg -3'
miRNA:   3'- gUgCUGUGCUg-CGCaaaaCGCC-CCGU- -5'
5286 5' -55.1 NC_001798.1 + 6056 0.66 0.946224
Target:  5'- --aGACGcCGGCgGCGa---GCGGGGCAc -3'
miRNA:   3'- gugCUGU-GCUG-CGCaaaaCGCCCCGU- -5'
5286 5' -55.1 NC_001798.1 + 59670 0.66 0.946224
Target:  5'- gGCGACuCGGCucGCGUggggGCGgcGGGCAc -3'
miRNA:   3'- gUGCUGuGCUG--CGCAaaa-CGC--CCCGU- -5'
5286 5' -55.1 NC_001798.1 + 154396 0.66 0.946224
Target:  5'- gGgGGCGCGAagGCGggcgGCGGcGGCGg -3'
miRNA:   3'- gUgCUGUGCUg-CGCaaaaCGCC-CCGU- -5'
5286 5' -55.1 NC_001798.1 + 126100 0.66 0.932024
Target:  5'- cCGCGGCGa-ACGCGUcucUGUGGGGgGa -3'
miRNA:   3'- -GUGCUGUgcUGCGCAaa-ACGCCCCgU- -5'
5286 5' -55.1 NC_001798.1 + 31145 0.66 0.932024
Target:  5'- -cCGGCGCgGGgGCGgcggUGCGgGGGCGa -3'
miRNA:   3'- guGCUGUG-CUgCGCaaa-ACGC-CCCGU- -5'
5286 5' -55.1 NC_001798.1 + 56521 0.67 0.915674
Target:  5'- aGCGGauCGugGCGg--UGcCGGGGCGc -3'
miRNA:   3'- gUGCUguGCugCGCaaaAC-GCCCCGU- -5'
5286 5' -55.1 NC_001798.1 + 60857 0.67 0.915674
Target:  5'- gGCGACGgGAuCGCGUccuccgaaGgGGGGCGg -3'
miRNA:   3'- gUGCUGUgCU-GCGCAaaa-----CgCCCCGU- -5'
5286 5' -55.1 NC_001798.1 + 65747 0.67 0.915674
Target:  5'- -cCGGCAUGAUGCuGgcggUGcCGGGGCu -3'
miRNA:   3'- guGCUGUGCUGCG-Caaa-AC-GCCCCGu -5'
5286 5' -55.1 NC_001798.1 + 2544 0.66 0.920805
Target:  5'- gGgGGCGCGGCccccgcgggagggGCGgcc-GCGGGGCGg -3'
miRNA:   3'- gUgCUGUGCUG-------------CGCaaaaCGCCCCGU- -5'
5286 5' -55.1 NC_001798.1 + 47047 0.66 0.920805
Target:  5'- aCGCGGCguuaucgGgGACGCGcaaUGcCGGGGCGa -3'
miRNA:   3'- -GUGCUG-------UgCUGCGCaaaAC-GCCCCGU- -5'
5286 5' -55.1 NC_001798.1 + 139352 0.66 0.921363
Target:  5'- uGCGGCcAUGGCgGCGUccgGCGGGGa- -3'
miRNA:   3'- gUGCUG-UGCUG-CGCAaaaCGCCCCgu -5'
5286 5' -55.1 NC_001798.1 + 149984 0.66 0.921363
Target:  5'- gCGCGGCGCc-CGCGgacgcCGGGGCGa -3'
miRNA:   3'- -GUGCUGUGcuGCGCaaaacGCCCCGU- -5'
5286 5' -55.1 NC_001798.1 + 154080 0.66 0.921363
Target:  5'- nGCGGCACGGCuggaGCGc----CGGGGCGc -3'
miRNA:   3'- gUGCUGUGCUG----CGCaaaacGCCCCGU- -5'
5286 5' -55.1 NC_001798.1 + 95662 0.66 0.921363
Target:  5'- aCGCGGCGucguuCGGCG-GUUUgGCGGcGGCGg -3'
miRNA:   3'- -GUGCUGU-----GCUGCgCAAAaCGCC-CCGU- -5'
5286 5' -55.1 NC_001798.1 + 111496 0.66 0.923024
Target:  5'- gCACGGCGCGgaccuccucGCGCGUcaaucccgacucggcGUGGGGCu -3'
miRNA:   3'- -GUGCUGUGC---------UGCGCAaaa------------CGCCCCGu -5'
5286 5' -55.1 NC_001798.1 + 50077 0.66 0.926814
Target:  5'- gACGACgAUGACGCucc-UGCGGaGGCc -3'
miRNA:   3'- gUGCUG-UGCUGCGcaaaACGCC-CCGu -5'
5286 5' -55.1 NC_001798.1 + 9664 0.66 0.932024
Target:  5'- cCGCG-CGCGgaggGCGCGggaUGgGGGGCu -3'
miRNA:   3'- -GUGCuGUGC----UGCGCaaaACgCCCCGu -5'
5286 5' -55.1 NC_001798.1 + 53108 0.66 0.932024
Target:  5'- gGCG-CGCGGCGCGagcucccUGCGGcuGGCGc -3'
miRNA:   3'- gUGCuGUGCUGCGCaaa----ACGCC--CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.