miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5286 5' -55.1 NC_001798.1 + 33893 1.09 0.003962
Target:  5'- aCACGACACGACGCGUUUUGCGGGGCAu -3'
miRNA:   3'- -GUGCUGUGCUGCGCAAAACGCCCCGU- -5'
5286 5' -55.1 NC_001798.1 + 153821 0.8 0.289823
Target:  5'- gGCGGCA-GGCGCGgcgUGCGGGGCc -3'
miRNA:   3'- gUGCUGUgCUGCGCaaaACGCCCCGu -5'
5286 5' -55.1 NC_001798.1 + 134932 0.78 0.363756
Target:  5'- -cCGAguCGGCGCGUgaccuggUGCGGGGCGc -3'
miRNA:   3'- guGCUguGCUGCGCAaa-----ACGCCCCGU- -5'
5286 5' -55.1 NC_001798.1 + 150575 0.76 0.440664
Target:  5'- cCGCGGgGCGGCGCGgagacgGCGGGGgAg -3'
miRNA:   3'- -GUGCUgUGCUGCGCaaaa--CGCCCCgU- -5'
5286 5' -55.1 NC_001798.1 + 150429 0.75 0.497726
Target:  5'- gGCGGCGCGGgGCGgacuccggacgcGCGGGGCGa -3'
miRNA:   3'- gUGCUGUGCUgCGCaaaa--------CGCCCCGU- -5'
5286 5' -55.1 NC_001798.1 + 102557 0.75 0.50643
Target:  5'- aCGCGGucaGCGGCGgGUg--GCGGGGCGc -3'
miRNA:   3'- -GUGCUg--UGCUGCgCAaaaCGCCCCGU- -5'
5286 5' -55.1 NC_001798.1 + 36495 0.75 0.50449
Target:  5'- -cCGGCGCGACGCGggcggccggGCGgGGGCGc -3'
miRNA:   3'- guGCUGUGCUGCGCaaaa-----CGC-CCCGU- -5'
5286 5' -55.1 NC_001798.1 + 2514 0.75 0.50643
Target:  5'- gGCGGCcgcgGCGGCgGCGUcg-GCGGGGCGg -3'
miRNA:   3'- gUGCUG----UGCUG-CGCAaaaCGCCCCGU- -5'
5286 5' -55.1 NC_001798.1 + 52165 0.74 0.555857
Target:  5'- cCGCGGgAgGcCGCG-UUUGCGGGGCGc -3'
miRNA:   3'- -GUGCUgUgCuGCGCaAAACGCCCCGU- -5'
5286 5' -55.1 NC_001798.1 + 77209 0.74 0.565923
Target:  5'- gGCGACGgugGACGCGgccgUGCGGGcGCAu -3'
miRNA:   3'- gUGCUGUg--CUGCGCaaa-ACGCCC-CGU- -5'
5286 5' -55.1 NC_001798.1 + 19140 0.74 0.545843
Target:  5'- cCACGAagaccaACGACGCGUgg-GUGGGGgAa -3'
miRNA:   3'- -GUGCUg-----UGCUGCGCAaaaCGCCCCgU- -5'
5286 5' -55.1 NC_001798.1 + 22725 0.74 0.565923
Target:  5'- gACGACgACGACGCaGggccGCGGGGCc -3'
miRNA:   3'- gUGCUG-UGCUGCG-CaaaaCGCCCCGu -5'
5286 5' -55.1 NC_001798.1 + 97630 0.74 0.525998
Target:  5'- uCGCGACGCGGgccgcCGCGgacgUGCGGGaGCGc -3'
miRNA:   3'- -GUGCUGUGCU-----GCGCaaa-ACGCCC-CGU- -5'
5286 5' -55.1 NC_001798.1 + 74487 0.74 0.548841
Target:  5'- aGCGGCGCGugGCcaucacccacccccUGCGGGGCGa -3'
miRNA:   3'- gUGCUGUGCugCGcaaa----------ACGCCCCGU- -5'
5286 5' -55.1 NC_001798.1 + 2957 0.73 0.586188
Target:  5'- gCGCaGGCGgGGCGCGUcggcgugcgGCGGGGCGg -3'
miRNA:   3'- -GUG-CUGUgCUGCGCAaaa------CGCCCCGU- -5'
5286 5' -55.1 NC_001798.1 + 153666 0.73 0.606587
Target:  5'- gCGCGGCGCGucCGCGg---GCGGGGaCGc -3'
miRNA:   3'- -GUGCUGUGCu-GCGCaaaaCGCCCC-GU- -5'
5286 5' -55.1 NC_001798.1 + 69503 0.72 0.667991
Target:  5'- gGCG-CAgGACGCGccggaGCGGGGCGu -3'
miRNA:   3'- gUGCuGUgCUGCGCaaaa-CGCCCCGU- -5'
5286 5' -55.1 NC_001798.1 + 36310 0.72 0.637308
Target:  5'- gGCGGCGgGGCGCGg---GcCGGGGCc -3'
miRNA:   3'- gUGCUGUgCUGCGCaaaaC-GCCCCGu -5'
5286 5' -55.1 NC_001798.1 + 22331 0.71 0.716438
Target:  5'- cCACgGACGCGgacGCGCGggcgucgggGCGGGGCc -3'
miRNA:   3'- -GUG-CUGUGC---UGCGCaaaa-----CGCCCCGu -5'
5286 5' -55.1 NC_001798.1 + 1541 0.71 0.728329
Target:  5'- gCACGGCGCGGCG-GUacucgcGCGGGGaCAu -3'
miRNA:   3'- -GUGCUGUGCUGCgCAaaa---CGCCCC-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.