Results 21 - 40 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5286 | 5' | -55.1 | NC_001798.1 | + | 14995 | 0.66 | 0.936995 |
Target: 5'- gGgGGgGCGAgGCGUgUUG-GGGGCGa -3' miRNA: 3'- gUgCUgUGCUgCGCAaAACgCCCCGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 15885 | 0.67 | 0.915674 |
Target: 5'- gCAgGGCGCGucgaaacCGCGg---GCGGGGUg -3' miRNA: 3'- -GUgCUGUGCu------GCGCaaaaCGCCCCGu -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 16050 | 0.67 | 0.903582 |
Target: 5'- aGCGACGCGugGUagGUcgcUG-GGGGCGg -3' miRNA: 3'- gUGCUGUGCugCG--CAaa-ACgCCCCGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 16622 | 0.68 | 0.883695 |
Target: 5'- gACGG-ACGACGCGc----CGGGGCAg -3' miRNA: 3'- gUGCUgUGCUGCGCaaaacGCCCCGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 19140 | 0.74 | 0.545843 |
Target: 5'- cCACGAagaccaACGACGCGUgg-GUGGGGgAa -3' miRNA: 3'- -GUGCUg-----UGCUGCGCAaaaCGCCCCgU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 19842 | 0.67 | 0.890553 |
Target: 5'- gCGCGACACG-CGCc-----CGGGGCGg -3' miRNA: 3'- -GUGCUGUGCuGCGcaaaacGCCCCGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 21826 | 0.69 | 0.838038 |
Target: 5'- cCGCGGgAUGACGCGggccccggGCaGGGCGc -3' miRNA: 3'- -GUGCUgUGCUGCGCaaaa----CGcCCCGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 21963 | 0.68 | 0.846156 |
Target: 5'- gCGCGGgAUGACGCGggccccggGCaGGGCGc -3' miRNA: 3'- -GUGCUgUGCUGCGCaaaa----CGcCCCGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 22331 | 0.71 | 0.716438 |
Target: 5'- cCACgGACGCGgacGCGCGggcgucgggGCGGGGCc -3' miRNA: 3'- -GUG-CUGUGC---UGCGCaaaa-----CGCCCCGu -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 22725 | 0.74 | 0.565923 |
Target: 5'- gACGACgACGACGCaGggccGCGGGGCc -3' miRNA: 3'- gUGCUG-UGCUGCG-CaaaaCGCCCCGu -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 23205 | 0.67 | 0.903582 |
Target: 5'- gACGAcCGCGACGCGggccGCuGGGUc -3' miRNA: 3'- gUGCU-GUGCUGCGCaaaaCGcCCCGu -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 23243 | 0.67 | 0.915674 |
Target: 5'- gACGACGuc-CGCGguccGCGGGGCGu -3' miRNA: 3'- gUGCUGUgcuGCGCaaaaCGCCCCGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 24536 | 0.66 | 0.936995 |
Target: 5'- gACGACgACGACGaCGgcgccgGCGGuGGUg -3' miRNA: 3'- gUGCUG-UGCUGC-GCaaaa--CGCC-CCGu -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 24569 | 0.68 | 0.883695 |
Target: 5'- gGCGGC-CGGCGCGcggagGCGGGccGCGu -3' miRNA: 3'- gUGCUGuGCUGCGCaaaa-CGCCC--CGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 26335 | 0.68 | 0.8618 |
Target: 5'- uGgGGCGCGACGcCGUgc-GCGGcGGCc -3' miRNA: 3'- gUgCUGUGCUGC-GCAaaaCGCC-CCGu -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 27044 | 0.67 | 0.903582 |
Target: 5'- gGCGGCACGucuccCGCGccc-GCGGGGgGu -3' miRNA: 3'- gUGCUGUGCu----GCGCaaaaCGCCCCgU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 28656 | 0.67 | 0.909746 |
Target: 5'- cCGCGACcgguuccgGCGcCGCGUg--GCGGcGGCc -3' miRNA: 3'- -GUGCUG--------UGCuGCGCAaaaCGCC-CCGu -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 31145 | 0.66 | 0.932024 |
Target: 5'- -cCGGCGCgGGgGCGgcggUGCGgGGGCGa -3' miRNA: 3'- guGCUGUG-CUgCGCaaa-ACGC-CCCGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 31774 | 0.67 | 0.903582 |
Target: 5'- gCGCGAC-CGACGCGc---GCGGGuCGg -3' miRNA: 3'- -GUGCUGuGCUGCGCaaaaCGCCCcGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 33893 | 1.09 | 0.003962 |
Target: 5'- aCACGACACGACGCGUUUUGCGGGGCAu -3' miRNA: 3'- -GUGCUGUGCUGCGCAAAACGCCCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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