Results 41 - 60 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5286 | 5' | -55.1 | NC_001798.1 | + | 54386 | 0.67 | 0.903582 |
Target: 5'- gGgGGcCGCGGCGCGgucgGCGGGaGCu -3' miRNA: 3'- gUgCU-GUGCUGCGCaaaaCGCCC-CGu -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 16050 | 0.67 | 0.903582 |
Target: 5'- aGCGACGCGugGUagGUcgcUG-GGGGCGg -3' miRNA: 3'- gUGCUGUGCugCG--CAaa-ACgCCCCGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 23205 | 0.67 | 0.903582 |
Target: 5'- gACGAcCGCGACGCGggccGCuGGGUc -3' miRNA: 3'- gUGCU-GUGCUGCGCaaaaCGcCCCGu -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 27044 | 0.67 | 0.903582 |
Target: 5'- gGCGGCACGucuccCGCGccc-GCGGGGgGu -3' miRNA: 3'- gUGCUGUGCu----GCGCaaaaCGCCCCgU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 31774 | 0.67 | 0.903582 |
Target: 5'- gCGCGAC-CGACGCGc---GCGGGuCGg -3' miRNA: 3'- -GUGCUGuGCUGCGCaaaaCGCCCcGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 1226 | 0.67 | 0.903582 |
Target: 5'- cCGCGGC-CGACgcccaGCGUaucUGCGgGGGCGg -3' miRNA: 3'- -GUGCUGuGCUG-----CGCAaa-ACGC-CCCGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 11337 | 0.67 | 0.903582 |
Target: 5'- gACGACgaACGGCGuCGgggUUUGgGGGGgGu -3' miRNA: 3'- gUGCUG--UGCUGC-GCa--AAACgCCCCgU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 52062 | 0.67 | 0.89977 |
Target: 5'- gCGCGACugucGCGugGCcgcccgcuacGCGGGGCGc -3' miRNA: 3'- -GUGCUG----UGCugCGcaaaa-----CGCCCCGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 9142 | 0.67 | 0.899127 |
Target: 5'- uGCGGCACGcggGCGCGgcgccgcccgcgccGgGGGGCAg -3' miRNA: 3'- gUGCUGUGC---UGCGCaaaa----------CgCCCCGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 83351 | 0.67 | 0.897183 |
Target: 5'- cCGCGGCGuCGccCGCGaacauaggcUGCGGGGCGa -3' miRNA: 3'- -GUGCUGU-GCu-GCGCaaa------ACGCCCCGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 39420 | 0.67 | 0.897183 |
Target: 5'- cCGgGGCGCGGC-CGUccgcgUGCGGGGgGg -3' miRNA: 3'- -GUgCUGUGCUGcGCAaa---ACGCCCCgU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 19842 | 0.67 | 0.890553 |
Target: 5'- gCGCGACACG-CGCc-----CGGGGCGg -3' miRNA: 3'- -GUGCUGUGCuGCGcaaaacGCCCCGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 11589 | 0.67 | 0.890553 |
Target: 5'- uCGCuGGC-CGAuCGCGUggaauuggGCGGGGCu -3' miRNA: 3'- -GUG-CUGuGCU-GCGCAaaa-----CGCCCCGu -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 135958 | 0.67 | 0.888519 |
Target: 5'- gCugGACGCggagcaauacuggaGACGCGUcgUGCgcguaugucccgGGGGCGg -3' miRNA: 3'- -GugCUGUG--------------CUGCGCAaaACG------------CCCCGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 1627 | 0.68 | 0.883695 |
Target: 5'- cCGCGGCagaggcgcagcgGCGGCGCGU----CGGGGUAc -3' miRNA: 3'- -GUGCUG------------UGCUGCGCAaaacGCCCCGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 58984 | 0.68 | 0.883695 |
Target: 5'- gGCGGCcggGCGaACGCGg---GgGGGGCGc -3' miRNA: 3'- gUGCUG---UGC-UGCGCaaaaCgCCCCGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 24569 | 0.68 | 0.883695 |
Target: 5'- gGCGGC-CGGCGCGcggagGCGGGccGCGu -3' miRNA: 3'- gUGCUGuGCUGCGCaaaa-CGCCC--CGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 16622 | 0.68 | 0.883695 |
Target: 5'- gACGG-ACGACGCGc----CGGGGCAg -3' miRNA: 3'- gUGCUgUGCUGCGCaaaacGCCCCGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 97815 | 0.68 | 0.876614 |
Target: 5'- uCGCGGCGCGcGCGCGcUUcUGCGcccugacggcGGGCGc -3' miRNA: 3'- -GUGCUGUGC-UGCGC-AAaACGC----------CCCGU- -5' |
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5286 | 5' | -55.1 | NC_001798.1 | + | 54715 | 0.68 | 0.876614 |
Target: 5'- cUACGACGCGGUGCGgaccUG-GGGGCc -3' miRNA: 3'- -GUGCUGUGCUGCGCaaa-ACgCCCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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