Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5287 | 3' | -58.1 | NC_001798.1 | + | 154393 | 0.71 | 0.506139 |
Target: 5'- gGGGGGGGCgCGaAGGCggGCGGCgGCGg -3' miRNA: 3'- -CUCCUCUGgGC-UCCGuaCGUUGgCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 151615 | 0.7 | 0.555202 |
Target: 5'- gGGGGccGGGCCgGGGGCGUG--GCCGCGu -3' miRNA: 3'- -CUCC--UCUGGgCUCCGUACguUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 150546 | 0.69 | 0.635044 |
Target: 5'- gGAGGAGacaaaggagagcgGCCCGGGGCccGCGggGCgGCGc -3' miRNA: 3'- -CUCCUC-------------UGGGCUCCGuaCGU--UGgCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 150199 | 0.66 | 0.792663 |
Target: 5'- uGGGGGGcggcACCgGGGGUGUuGguGCCGCGg -3' miRNA: 3'- -CUCCUC----UGGgCUCCGUA-CguUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 149967 | 0.68 | 0.716656 |
Target: 5'- -cGGAGACgCCGAcgggGGCGcgGCGcCCGCGg -3' miRNA: 3'- cuCCUCUG-GGCU----CCGUa-CGUuGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 149928 | 0.74 | 0.348729 |
Target: 5'- gGAGGAGGag-GAGGCGgcgGCGACCGCGg -3' miRNA: 3'- -CUCCUCUgggCUCCGUa--CGUUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 147702 | 0.67 | 0.745943 |
Target: 5'- aGGGGGGGuCCCagaaaGGGCAggcagGuCAGCCGCAc -3' miRNA: 3'- -CUCCUCU-GGGc----UCCGUa----C-GUUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 147237 | 0.68 | 0.706739 |
Target: 5'- cGGGGGcCCCGGGGCcccgGGCCGCGc -3' miRNA: 3'- cUCCUCuGGGCUCCGuacgUUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 146441 | 0.68 | 0.706739 |
Target: 5'- -cGGAGccCCCGGaGCccGCGGCCGCAg -3' miRNA: 3'- cuCCUCu-GGGCUcCGuaCGUUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 146263 | 0.66 | 0.81905 |
Target: 5'- aAGGAGACCCaa-GCAccGCAGCCGgAg -3' miRNA: 3'- cUCCUCUGGGcucCGUa-CGUUGGCgU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 137485 | 0.75 | 0.341066 |
Target: 5'- gGAGGGGGgCCGGGGCAg--AGCCGCGu -3' miRNA: 3'- -CUCCUCUgGGCUCCGUacgUUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 136605 | 0.69 | 0.615717 |
Target: 5'- gGGGGAcgGGCCCG-GGCAacUGCAA-CGCAg -3' miRNA: 3'- -CUCCU--CUGGGCuCCGU--ACGUUgGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 135793 | 0.74 | 0.370028 |
Target: 5'- gGAGGAGgccgugugcgcgGCCCGGGGCGucauggaggacgccUGUGACCGCu -3' miRNA: 3'- -CUCCUC------------UGGGCUCCGU--------------ACGUUGGCGu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 134222 | 0.69 | 0.615717 |
Target: 5'- uGGGGGACCCGAcccuguggcgGGCGcUGUAugCGUg -3' miRNA: 3'- cUCCUCUGGGCU----------CCGU-ACGUugGCGu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 132114 | 0.67 | 0.774343 |
Target: 5'- --uGGGGCCCGAGGUccUGCAggcggcccugcGCCGCc -3' miRNA: 3'- cucCUCUGGGCUCCGu-ACGU-----------UGGCGu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 130091 | 0.66 | 0.801613 |
Target: 5'- cGGGcacAGGCCCGGGGCGuUGCAcucgGgCGUAg -3' miRNA: 3'- cUCC---UCUGGGCUCCGU-ACGU----UgGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 126588 | 0.68 | 0.706739 |
Target: 5'- -uGGAGAucCCCGGGGCccGCAGCUuCGg -3' miRNA: 3'- cuCCUCU--GGGCUCCGuaCGUUGGcGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 123945 | 0.74 | 0.364422 |
Target: 5'- -cGGGGGCCUGGuGGCAccuccccgGCGGCCGCAu -3' miRNA: 3'- cuCCUCUGGGCU-CCGUa-------CGUUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 121846 | 0.67 | 0.774343 |
Target: 5'- gGAGGAGcagcucacgGCCCcggGAGGCGacacgGCcACCGCGg -3' miRNA: 3'- -CUCCUC---------UGGG---CUCCGUa----CGuUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 116092 | 0.67 | 0.745943 |
Target: 5'- cGGGGGcGAccucCCCGAGGaGUGCAugGCCGUg -3' miRNA: 3'- -CUCCU-CU----GGGCUCCgUACGU--UGGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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