miRNA display CGI


Results 41 - 60 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5287 5' -66.1 NC_001798.1 + 19359 0.73 0.155033
Target:  5'- aACCCCGCCC-CGCAUCauCCCGcCCGCa -3'
miRNA:   3'- -UGGGGCGGGcGUGUGGacGGGC-GGUG- -5'
5287 5' -66.1 NC_001798.1 + 19981 0.66 0.436184
Target:  5'- aGCCCCGCCgGaCGCGgauuccggguucucCCgGCCgGCCGg -3'
miRNA:   3'- -UGGGGCGGgC-GUGU--------------GGaCGGgCGGUg -5'
5287 5' -66.1 NC_001798.1 + 20759 0.68 0.344048
Target:  5'- cCCCCGagcuCCCGCggggagcgACGgC-GCCCGCCGCg -3'
miRNA:   3'- uGGGGC----GGGCG--------UGUgGaCGGGCGGUG- -5'
5287 5' -66.1 NC_001798.1 + 21469 0.68 0.344048
Target:  5'- cCCCCGCCCGUcCcCCcgGCCgGCCc- -3'
miRNA:   3'- uGGGGCGGGCGuGuGGa-CGGgCGGug -5'
5287 5' -66.1 NC_001798.1 + 21647 0.66 0.421924
Target:  5'- uGCCCCGCUCGC-CGCCggcgucucUGUCuCGCUg- -3'
miRNA:   3'- -UGGGGCGGGCGuGUGG--------ACGG-GCGGug -5'
5287 5' -66.1 NC_001798.1 + 21796 0.67 0.397459
Target:  5'- cCCCCGUCCGgGCccGCCUcggggcggaGCCCGCgGg -3'
miRNA:   3'- uGGGGCGGGCgUG--UGGA---------CGGGCGgUg -5'
5287 5' -66.1 NC_001798.1 + 22078 0.68 0.344048
Target:  5'- gGCCCCGCCCccuuugggGCGgaGCC-GCCCGCgGa -3'
miRNA:   3'- -UGGGGCGGG--------CGUg-UGGaCGGGCGgUg -5'
5287 5' -66.1 NC_001798.1 + 22457 0.67 0.39826
Target:  5'- cCCCCGcCCCGCGCGCCccgaggacuauaucaGCCagGCgACg -3'
miRNA:   3'- uGGGGC-GGGCGUGUGGa--------------CGGg-CGgUG- -5'
5287 5' -66.1 NC_001798.1 + 22851 0.66 0.447274
Target:  5'- cACCCCGaaCCCGgAC-CgUcGcCCCGCCGCg -3'
miRNA:   3'- -UGGGGC--GGGCgUGuGgA-C-GGGCGGUG- -5'
5287 5' -66.1 NC_001798.1 + 23115 0.67 0.413669
Target:  5'- --gCgGCCCGCuCGCCUuCuCCGCCGCg -3'
miRNA:   3'- uggGgCGGGCGuGUGGAcG-GGCGGUG- -5'
5287 5' -66.1 NC_001798.1 + 23337 0.75 0.118611
Target:  5'- cACCgCCGCCgGCGCGCCc-CCCGCCGg -3'
miRNA:   3'- -UGG-GGCGGgCGUGUGGacGGGCGGUg -5'
5287 5' -66.1 NC_001798.1 + 23484 0.76 0.097305
Target:  5'- gACgCCGCCCGCGCcCCcGCCagCGCCGCa -3'
miRNA:   3'- -UGgGGCGGGCGUGuGGaCGG--GCGGUG- -5'
5287 5' -66.1 NC_001798.1 + 23587 0.7 0.264979
Target:  5'- cGCCCCggccgaGCCCGCccaGgGCCgaGCCCGCCcCg -3'
miRNA:   3'- -UGGGG------CGGGCG---UgUGGa-CGGGCGGuG- -5'
5287 5' -66.1 NC_001798.1 + 23661 0.73 0.1666
Target:  5'- cGCCgCCggGCCCGCGCGgCggugGCCgGCCGCg -3'
miRNA:   3'- -UGG-GG--CGGGCGUGUgGa---CGGgCGGUG- -5'
5287 5' -66.1 NC_001798.1 + 24272 0.68 0.315927
Target:  5'- cGCCgCGCCuaCGCGCcCCUGCUgGCgCGCg -3'
miRNA:   3'- -UGGgGCGG--GCGUGuGGACGGgCG-GUG- -5'
5287 5' -66.1 NC_001798.1 + 24373 0.67 0.373925
Target:  5'- cGCCCgcgggaaGCCCGC-CGCCg--CCGCCGCc -3'
miRNA:   3'- -UGGGg------CGGGCGuGUGGacgGGCGGUG- -5'
5287 5' -66.1 NC_001798.1 + 24448 0.7 0.247104
Target:  5'- -gCCCGCCgGCuacgGCGCCgcgggggUGCUCGCCGCc -3'
miRNA:   3'- ugGGGCGGgCG----UGUGG-------ACGGGCGGUG- -5'
5287 5' -66.1 NC_001798.1 + 24499 0.68 0.329766
Target:  5'- cGCCgCGCCCGCcuccGCGCCgGCCgggGCCGa -3'
miRNA:   3'- -UGGgGCGGGCG----UGUGGaCGGg--CGGUg -5'
5287 5' -66.1 NC_001798.1 + 24691 0.73 0.155033
Target:  5'- aGCCCgGCCCGcCGCGCCcccgcGCCCGgggcCCGCg -3'
miRNA:   3'- -UGGGgCGGGC-GUGUGGa----CGGGC----GGUG- -5'
5287 5' -66.1 NC_001798.1 + 24756 0.82 0.036156
Target:  5'- cGCCCCGCCUGCGCGCCUGgCUGCgCGa -3'
miRNA:   3'- -UGGGGCGGGCGUGUGGACgGGCG-GUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.