miRNA display CGI


Results 21 - 40 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5287 5' -66.1 NC_001798.1 + 147438 0.74 0.140743
Target:  5'- cGCCCUuuGCCCGCGuccCACCgagacGCCgCGCCGCg -3'
miRNA:   3'- -UGGGG--CGGGCGU---GUGGa----CGG-GCGGUG- -5'
5287 5' -66.1 NC_001798.1 + 147198 0.68 0.336852
Target:  5'- cCCCCGCCCgGCGguCCgGCCCggGCCc- -3'
miRNA:   3'- uGGGGCGGG-CGUguGGaCGGG--CGGug -5'
5287 5' -66.1 NC_001798.1 + 147051 0.67 0.413669
Target:  5'- cGCCCCGgCCGgaggggccccCGCACCUcGgCgGCCGCc -3'
miRNA:   3'- -UGGGGCgGGC----------GUGUGGA-CgGgCGGUG- -5'
5287 5' -66.1 NC_001798.1 + 146770 0.72 0.187602
Target:  5'- aGCCCCGCCCGCGugUugCUGUgggcauuuCUGCUGCg -3'
miRNA:   3'- -UGGGGCGGGCGU--GugGACG--------GGCGGUG- -5'
5287 5' -66.1 NC_001798.1 + 146605 0.69 0.309173
Target:  5'- cGCCagCGgCC-CACGCCU-CCCGCCGCa -3'
miRNA:   3'- -UGGg-GCgGGcGUGUGGAcGGGCGGUG- -5'
5287 5' -66.1 NC_001798.1 + 146444 0.67 0.389509
Target:  5'- aGCCCCcggaGCCCGCG-GCCgcaGCCgagcagCGCCGCg -3'
miRNA:   3'- -UGGGG----CGGGCGUgUGGa--CGG------GCGGUG- -5'
5287 5' -66.1 NC_001798.1 + 145972 0.7 0.235032
Target:  5'- uACCCCGCgCCcgcagccuccggcaGCACGCCgaccaCCGCCGCc -3'
miRNA:   3'- -UGGGGCG-GG--------------CGUGUGGacg--GGCGGUG- -5'
5287 5' -66.1 NC_001798.1 + 145729 0.78 0.075741
Target:  5'- gGCCCCgGCCCGCGC-CCcG-CCGCCACa -3'
miRNA:   3'- -UGGGG-CGGGCGUGuGGaCgGGCGGUG- -5'
5287 5' -66.1 NC_001798.1 + 145621 0.72 0.201295
Target:  5'- gACCCCGCCC-CAcCGCCccGCCCGgCAg -3'
miRNA:   3'- -UGGGGCGGGcGU-GUGGa-CGGGCgGUg -5'
5287 5' -66.1 NC_001798.1 + 145540 0.68 0.329766
Target:  5'- cCCCCGCCCG---GCC-GCCCGCguCg -3'
miRNA:   3'- uGGGGCGGGCgugUGGaCGGGCGguG- -5'
5287 5' -66.1 NC_001798.1 + 145498 0.76 0.092341
Target:  5'- cCCCCGCCCggccgccGCGCGCCcccGCCCgGCCGCc -3'
miRNA:   3'- uGGGGCGGG-------CGUGUGGa--CGGG-CGGUG- -5'
5287 5' -66.1 NC_001798.1 + 145456 0.76 0.092341
Target:  5'- cCCCCGCCCggccgccGCGCGCCcccGCCCgGCCGCc -3'
miRNA:   3'- uGGGGCGGG-------CGUGUGGa--CGGG-CGGUG- -5'
5287 5' -66.1 NC_001798.1 + 145414 0.76 0.092341
Target:  5'- cCCCCGCCCggccgccGCGCGCCcccGCCCgGCCGCc -3'
miRNA:   3'- uGGGGCGGG-------CGUGUGGa--CGGG-CGGUG- -5'
5287 5' -66.1 NC_001798.1 + 143023 0.7 0.264979
Target:  5'- cGCCCgcagcUGCUCGCGCACCUGCgCGgCGu -3'
miRNA:   3'- -UGGG-----GCGGGCGUGUGGACGgGCgGUg -5'
5287 5' -66.1 NC_001798.1 + 142690 0.73 0.158805
Target:  5'- cACCCCGCCCGCuuGCAuauuccCUUGCgCGCgGCg -3'
miRNA:   3'- -UGGGGCGGGCG--UGU------GGACGgGCGgUG- -5'
5287 5' -66.1 NC_001798.1 + 142530 0.66 0.438729
Target:  5'- -gUCCGCCCGacCACACCc-CCCGCCc- -3'
miRNA:   3'- ugGGGCGGGC--GUGUGGacGGGCGGug -5'
5287 5' -66.1 NC_001798.1 + 141463 0.67 0.366293
Target:  5'- gGCUgCGagCUGCugACCgGCUCGCCGCg -3'
miRNA:   3'- -UGGgGCg-GGCGugUGGaCGGGCGGUG- -5'
5287 5' -66.1 NC_001798.1 + 141121 0.66 0.421924
Target:  5'- gACgCCGCCgGCGCAUCggcaaccagGgCCGCCGa -3'
miRNA:   3'- -UGgGGCGGgCGUGUGGa--------CgGGCGGUg -5'
5287 5' -66.1 NC_001798.1 + 139862 0.69 0.309173
Target:  5'- aGCCCCGCCuCGCugGaagaCCUGCa-GCgGCg -3'
miRNA:   3'- -UGGGGCGG-GCGugU----GGACGggCGgUG- -5'
5287 5' -66.1 NC_001798.1 + 139315 0.78 0.065085
Target:  5'- cGCCCCGCguCCGCAuCGCCggcGCCCGCgCGCg -3'
miRNA:   3'- -UGGGGCG--GGCGU-GUGGa--CGGGCG-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.