miRNA display CGI


Results 41 - 60 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5287 5' -66.1 NC_001798.1 + 71866 0.66 0.464635
Target:  5'- cGCCCC-CUCGguuCACCUGgCCGCgGCc -3'
miRNA:   3'- -UGGGGcGGGCgu-GUGGACgGGCGgUG- -5'
5287 5' -66.1 NC_001798.1 + 133470 0.66 0.464635
Target:  5'- gGCCgaCGCCCugaGCGgCUGCCCcCCGCg -3'
miRNA:   3'- -UGGg-GCGGGcg-UGUgGACGGGcGGUG- -5'
5287 5' -66.1 NC_001798.1 + 4737 0.66 0.464635
Target:  5'- gGCCUC-CCCGgACGCCggGgCCGCCuCg -3'
miRNA:   3'- -UGGGGcGGGCgUGUGGa-CgGGCGGuG- -5'
5287 5' -66.1 NC_001798.1 + 31170 0.66 0.464635
Target:  5'- ---gCGaCCCGCGgaACCUcccaGCCCGCCGCg -3'
miRNA:   3'- ugggGC-GGGCGUg-UGGA----CGGGCGGUG- -5'
5287 5' -66.1 NC_001798.1 + 53585 0.66 0.465513
Target:  5'- cACCCUGCUCccgaagcugcugguGCGCGCCccguucaagagcggGgCCGCCGCg -3'
miRNA:   3'- -UGGGGCGGG--------------CGUGUGGa-------------CgGGCGGUG- -5'
5287 5' -66.1 NC_001798.1 + 34129 0.66 0.45591
Target:  5'- -gCCCGaCCCGC--GCCUGCCCcCC-Cg -3'
miRNA:   3'- ugGGGC-GGGCGugUGGACGGGcGGuG- -5'
5287 5' -66.1 NC_001798.1 + 32787 0.66 0.45591
Target:  5'- -gCgCGCCCGCGCcgGCCggcgacGCCC-CCGCg -3'
miRNA:   3'- ugGgGCGGGCGUG--UGGa-----CGGGcGGUG- -5'
5287 5' -66.1 NC_001798.1 + 137692 0.66 0.438729
Target:  5'- cGCCCCGCUagaGUACGagaucgacguuuCCUGCCCuGCUuguuGCg -3'
miRNA:   3'- -UGGGGCGGg--CGUGU------------GGACGGG-CGG----UG- -5'
5287 5' -66.1 NC_001798.1 + 150892 0.66 0.438729
Target:  5'- cCCCCGCaCCGC-CGCCc-CCgCGCCGg -3'
miRNA:   3'- uGGGGCG-GGCGuGUGGacGG-GCGGUg -5'
5287 5' -66.1 NC_001798.1 + 153696 0.66 0.438729
Target:  5'- gGCCgCCGCCgGCGCagGCUcagGCgCGCCAg -3'
miRNA:   3'- -UGG-GGCGGgCGUG--UGGa--CGgGCGGUg -5'
5287 5' -66.1 NC_001798.1 + 22851 0.66 0.447274
Target:  5'- cACCCCGaaCCCGgAC-CgUcGcCCCGCCGCg -3'
miRNA:   3'- -UGGGGC--GGGCgUGuGgA-C-GGGCGGUG- -5'
5287 5' -66.1 NC_001798.1 + 52943 0.66 0.447274
Target:  5'- gACCgCCGCCCuccggGCGCACgUGUCCGggaggCGCg -3'
miRNA:   3'- -UGG-GGCGGG-----CGUGUGgACGGGCg----GUG- -5'
5287 5' -66.1 NC_001798.1 + 91063 0.66 0.447274
Target:  5'- cCCCCGCa-GUACACCUuagggGCgCGCCGg -3'
miRNA:   3'- uGGGGCGggCGUGUGGA-----CGgGCGGUg -5'
5287 5' -66.1 NC_001798.1 + 96998 0.66 0.447274
Target:  5'- gGCCaggGCCgGCcCGCC-GCCCGCCGa -3'
miRNA:   3'- -UGGgg-CGGgCGuGUGGaCGGGCGGUg -5'
5287 5' -66.1 NC_001798.1 + 114249 0.66 0.450718
Target:  5'- cACCCuguCGCUCGUGCgcuuucuggagcucgGCCUGUCCGUgGCg -3'
miRNA:   3'- -UGGG---GCGGGCGUG---------------UGGACGGGCGgUG- -5'
5287 5' -66.1 NC_001798.1 + 126563 0.66 0.450718
Target:  5'- aACCCCGCCCuccGCuACAcgacccuggagauccCCgggGCCCGCaGCu -3'
miRNA:   3'- -UGGGGCGGG---CG-UGU---------------GGa--CGGGCGgUG- -5'
5287 5' -66.1 NC_001798.1 + 29775 0.66 0.45331
Target:  5'- aACCCCgGCCCgGCACgagcucccgggcggACCccgGCCCcgagcggccGCCGCg -3'
miRNA:   3'- -UGGGG-CGGG-CGUG--------------UGGa--CGGG---------CGGUG- -5'
5287 5' -66.1 NC_001798.1 + 3622 0.66 0.45591
Target:  5'- cGCCgCGCCCgagauccggaaGCAgGCCUgGUCCagcGCCACg -3'
miRNA:   3'- -UGGgGCGGG-----------CGUgUGGA-CGGG---CGGUG- -5'
5287 5' -66.1 NC_001798.1 + 5300 0.66 0.45591
Target:  5'- gACgCCG-CCGCGCcCCgGCUCGCCGg -3'
miRNA:   3'- -UGgGGCgGGCGUGuGGaCGGGCGGUg -5'
5287 5' -66.1 NC_001798.1 + 50696 0.66 0.45591
Target:  5'- gUCCCGUUCuCGCAUUUGCCCGCgGg -3'
miRNA:   3'- uGGGGCGGGcGUGUGGACGGGCGgUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.