Results 21 - 40 of 308 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5287 | 5' | -66.1 | NC_001798.1 | + | 114249 | 0.66 | 0.450718 |
Target: 5'- cACCCuguCGCUCGUGCgcuuucuggagcucgGCCUGUCCGUgGCg -3' miRNA: 3'- -UGGG---GCGGGCGUG---------------UGGACGGGCGgUG- -5' |
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5287 | 5' | -66.1 | NC_001798.1 | + | 126563 | 0.66 | 0.450718 |
Target: 5'- aACCCCGCCCuccGCuACAcgacccuggagauccCCgggGCCCGCaGCu -3' miRNA: 3'- -UGGGGCGGG---CG-UGU---------------GGa--CGGGCGgUG- -5' |
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5287 | 5' | -66.1 | NC_001798.1 | + | 96998 | 0.66 | 0.447274 |
Target: 5'- gGCCaggGCCgGCcCGCC-GCCCGCCGa -3' miRNA: 3'- -UGGgg-CGGgCGuGUGGaCGGGCGGUg -5' |
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5287 | 5' | -66.1 | NC_001798.1 | + | 91063 | 0.66 | 0.447274 |
Target: 5'- cCCCCGCa-GUACACCUuagggGCgCGCCGg -3' miRNA: 3'- uGGGGCGggCGUGUGGA-----CGgGCGGUg -5' |
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5287 | 5' | -66.1 | NC_001798.1 | + | 52943 | 0.66 | 0.447274 |
Target: 5'- gACCgCCGCCCuccggGCGCACgUGUCCGggaggCGCg -3' miRNA: 3'- -UGG-GGCGGG-----CGUGUGgACGGGCg----GUG- -5' |
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5287 | 5' | -66.1 | NC_001798.1 | + | 22851 | 0.66 | 0.447274 |
Target: 5'- cACCCCGaaCCCGgAC-CgUcGcCCCGCCGCg -3' miRNA: 3'- -UGGGGC--GGGCgUGuGgA-C-GGGCGGUG- -5' |
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5287 | 5' | -66.1 | NC_001798.1 | + | 69881 | 0.66 | 0.438729 |
Target: 5'- cUCCCaCCCGacaGCACCcggGCCCGaacCCACg -3' miRNA: 3'- uGGGGcGGGCg--UGUGGa--CGGGC---GGUG- -5' |
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5287 | 5' | -66.1 | NC_001798.1 | + | 54433 | 0.66 | 0.438729 |
Target: 5'- gACCCgGCgCGacaaCGCACC--CCCGCCGCu -3' miRNA: 3'- -UGGGgCGgGC----GUGUGGacGGGCGGUG- -5' |
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5287 | 5' | -66.1 | NC_001798.1 | + | 42714 | 0.66 | 0.438729 |
Target: 5'- uCCCCGUcgccgucgUCGC-CACCggccgaggGCCCGUCGCc -3' miRNA: 3'- uGGGGCG--------GGCGuGUGGa-------CGGGCGGUG- -5' |
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5287 | 5' | -66.1 | NC_001798.1 | + | 69456 | 0.66 | 0.438729 |
Target: 5'- gGCCCUGUCCcccaaaaGCACCgGgCCGUCGCg -3' miRNA: 3'- -UGGGGCGGGcg-----UGUGGaCgGGCGGUG- -5' |
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5287 | 5' | -66.1 | NC_001798.1 | + | 57864 | 0.66 | 0.438729 |
Target: 5'- -gCCCGCCUGCcCcCCUGgccuuauaCCCGuCCACg -3' miRNA: 3'- ugGGGCGGGCGuGuGGAC--------GGGC-GGUG- -5' |
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5287 | 5' | -66.1 | NC_001798.1 | + | 109345 | 0.66 | 0.438729 |
Target: 5'- cACUCgCGCgUGCugGCCgGCCUgGCCGCc -3' miRNA: 3'- -UGGG-GCGgGCGugUGGaCGGG-CGGUG- -5' |
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5287 | 5' | -66.1 | NC_001798.1 | + | 142530 | 0.66 | 0.438729 |
Target: 5'- -gUCCGCCCGacCACACCc-CCCGCCc- -3' miRNA: 3'- ugGGGCGGGC--GUGUGGacGGGCGGug -5' |
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5287 | 5' | -66.1 | NC_001798.1 | + | 11048 | 0.66 | 0.438729 |
Target: 5'- gGCCCCGCCCaucCAuUACCcGCCUcCCAUg -3' miRNA: 3'- -UGGGGCGGGc--GU-GUGGaCGGGcGGUG- -5' |
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5287 | 5' | -66.1 | NC_001798.1 | + | 29987 | 0.66 | 0.438729 |
Target: 5'- cCCCCGUgggCCGUGCGCC-GCCCcCCGa -3' miRNA: 3'- uGGGGCG---GGCGUGUGGaCGGGcGGUg -5' |
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5287 | 5' | -66.1 | NC_001798.1 | + | 71417 | 0.66 | 0.438729 |
Target: 5'- -gCCCGCgCGgACGCCccCCgGCCACg -3' miRNA: 3'- ugGGGCGgGCgUGUGGacGGgCGGUG- -5' |
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5287 | 5' | -66.1 | NC_001798.1 | + | 137692 | 0.66 | 0.438729 |
Target: 5'- cGCCCCGCUagaGUACGagaucgacguuuCCUGCCCuGCUuguuGCg -3' miRNA: 3'- -UGGGGCGGg--CGUGU------------GGACGGG-CGG----UG- -5' |
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5287 | 5' | -66.1 | NC_001798.1 | + | 150892 | 0.66 | 0.438729 |
Target: 5'- cCCCCGCaCCGC-CGCCc-CCgCGCCGg -3' miRNA: 3'- uGGGGCG-GGCGuGUGGacGG-GCGGUg -5' |
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5287 | 5' | -66.1 | NC_001798.1 | + | 153696 | 0.66 | 0.438729 |
Target: 5'- gGCCgCCGCCgGCGCagGCUcagGCgCGCCAg -3' miRNA: 3'- -UGG-GGCGGgCGUG--UGGa--CGgGCGGUg -5' |
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5287 | 5' | -66.1 | NC_001798.1 | + | 19981 | 0.66 | 0.436184 |
Target: 5'- aGCCCCGCCgGaCGCGgauuccggguucucCCgGCCgGCCGg -3' miRNA: 3'- -UGGGGCGGgC-GUGU--------------GGaCGGgCGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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