miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5288 5' -66.3 NC_001798.1 + 58876 0.66 0.471652
Target:  5'- cUGgGuCCCGgGCCCggaACCCCCGgaggcgcgccggccuCCCCGa -3'
miRNA:   3'- aAUgC-GGGCaCGGG---UGGGGGC---------------GGGGC- -5'
5288 5' -66.3 NC_001798.1 + 28270 0.66 0.46814
Target:  5'- -aGCGCgggCCGcagcGCCCcCUUCCGCCCCa -3'
miRNA:   3'- aaUGCG---GGCa---CGGGuGGGGGCGGGGc -5'
5288 5' -66.3 NC_001798.1 + 47885 0.66 0.46814
Target:  5'- -gGCGCUCGcacGCCCcUCCCCGCggaccCCCa -3'
miRNA:   3'- aaUGCGGGCa--CGGGuGGGGGCG-----GGGc -5'
5288 5' -66.3 NC_001798.1 + 20784 0.66 0.46814
Target:  5'- -gGCGCCCGccGCgUAgguCUCCCGCCUCa -3'
miRNA:   3'- aaUGCGGGCa-CGgGU---GGGGGCGGGGc -5'
5288 5' -66.3 NC_001798.1 + 54291 0.66 0.46814
Target:  5'- ---gGUUCGgGgCCGCCCUgGCCCCGg -3'
miRNA:   3'- aaugCGGGCaCgGGUGGGGgCGGGGC- -5'
5288 5' -66.3 NC_001798.1 + 52788 0.66 0.462898
Target:  5'- -gGCGCCCGUGagcgggacggcagacCCCGCCuuCCUGCUCg- -3'
miRNA:   3'- aaUGCGGGCAC---------------GGGUGG--GGGCGGGgc -5'
5288 5' -66.3 NC_001798.1 + 110907 0.66 0.459421
Target:  5'- -cGCGUgCG-GCCagcCGCCCCCGCCggcCCGc -3'
miRNA:   3'- aaUGCGgGCaCGG---GUGGGGGCGG---GGC- -5'
5288 5' -66.3 NC_001798.1 + 16242 0.66 0.459421
Target:  5'- -gGgGCCgGgGCCC-UCCCCGCCCa- -3'
miRNA:   3'- aaUgCGGgCaCGGGuGGGGGCGGGgc -5'
5288 5' -66.3 NC_001798.1 + 21318 0.66 0.459421
Target:  5'- ---gGCCCcccgGCCCcccgGCCCCCcgGCCCCc -3'
miRNA:   3'- aaugCGGGca--CGGG----UGGGGG--CGGGGc -5'
5288 5' -66.3 NC_001798.1 + 26451 0.66 0.459421
Target:  5'- -gACGCggaCGcggGCCCGCCCCCGCagauaCGc -3'
miRNA:   3'- aaUGCGg--GCa--CGGGUGGGGGCGgg---GC- -5'
5288 5' -66.3 NC_001798.1 + 65785 0.66 0.459421
Target:  5'- -aACGCCUGcaugcacaGCCCgauGCCCCCGUUgCGg -3'
miRNA:   3'- aaUGCGGGCa-------CGGG---UGGGGGCGGgGC- -5'
5288 5' -66.3 NC_001798.1 + 75909 0.66 0.459421
Target:  5'- aUGCGCgaG-GCCUuagacGCCCUCGCCCgCGg -3'
miRNA:   3'- aAUGCGggCaCGGG-----UGGGGGCGGG-GC- -5'
5288 5' -66.3 NC_001798.1 + 23907 0.66 0.459421
Target:  5'- -cGgGCCCGguucgagGCCUcgggcGCCCCgGCgCCCGu -3'
miRNA:   3'- aaUgCGGGCa------CGGG-----UGGGGgCG-GGGC- -5'
5288 5' -66.3 NC_001798.1 + 48405 0.66 0.459421
Target:  5'- -cGgGCCCccGCCCGCUcggcuuCCCGuCCCCGc -3'
miRNA:   3'- aaUgCGGGcaCGGGUGG------GGGC-GGGGC- -5'
5288 5' -66.3 NC_001798.1 + 86823 0.66 0.459421
Target:  5'- -cGCcCCCGUcGCUCcgGCUCCCGgCCCGg -3'
miRNA:   3'- aaUGcGGGCA-CGGG--UGGGGGCgGGGC- -5'
5288 5' -66.3 NC_001798.1 + 5350 0.66 0.459421
Target:  5'- aUUAUGCgCG-GCCcCGCCCCgaCGCCCgCGc -3'
miRNA:   3'- -AAUGCGgGCaCGG-GUGGGG--GCGGG-GC- -5'
5288 5' -66.3 NC_001798.1 + 129748 0.66 0.458554
Target:  5'- -gAC-CCCGacgugGCCCGCCCUccugccacgcucaCGCCCCc -3'
miRNA:   3'- aaUGcGGGCa----CGGGUGGGG-------------GCGGGGc -5'
5288 5' -66.3 NC_001798.1 + 32059 0.66 0.454231
Target:  5'- -gGCGUCCGcgggcGCCgCGCCCCCGUcggcgucuccgucguCCCa -3'
miRNA:   3'- aaUGCGGGCa----CGG-GUGGGGGCG---------------GGGc -5'
5288 5' -66.3 NC_001798.1 + 35460 0.66 0.450788
Target:  5'- -cGCgGCCCGUcuGCUgGCCCgCGgCCCGu -3'
miRNA:   3'- aaUG-CGGGCA--CGGgUGGGgGCgGGGC- -5'
5288 5' -66.3 NC_001798.1 + 34423 0.66 0.450788
Target:  5'- --cCGCCCGccCCCcCCCCCucuCCCCGc -3'
miRNA:   3'- aauGCGGGCacGGGuGGGGGc--GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.