miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5289 3' -57 NC_001798.1 + 27321 0.66 0.891807
Target:  5'- aGGGGAGggAGGGGGuGGCggggAAC-CgugugCGg -3'
miRNA:   3'- gCCCCUCa-UCCCCC-UCGa---UUGuGa----GC- -5'
5289 3' -57 NC_001798.1 + 27284 0.66 0.891807
Target:  5'- gCGGGGGGgAGGGGcuGCcgcgaGCUCGg -3'
miRNA:   3'- -GCCCCUCaUCCCCcuCGauug-UGAGC- -5'
5289 3' -57 NC_001798.1 + 14318 0.66 0.891807
Target:  5'- uGGGGGGUGcGuGGGGAGgCguGCGgUCGc -3'
miRNA:   3'- gCCCCUCAU-C-CCCCUC-GauUGUgAGC- -5'
5289 3' -57 NC_001798.1 + 73944 0.66 0.885084
Target:  5'- uGGuGGAG-GGGGGcGAGUgGACGCgcgCGg -3'
miRNA:   3'- gCC-CCUCaUCCCC-CUCGaUUGUGa--GC- -5'
5289 3' -57 NC_001798.1 + 21561 0.66 0.885084
Target:  5'- gGGGGGGgggGGGGGGAGggAAagGCa-- -3'
miRNA:   3'- gCCCCUCa--UCCCCCUCgaUUg-UGagc -5'
5289 3' -57 NC_001798.1 + 132499 0.66 0.880944
Target:  5'- gGGGcGGGUacggacucuccgcaAGGGGGAGCUgcugaucuacauGgacggguccggggcGCGCUCGg -3'
miRNA:   3'- gCCC-CUCA--------------UCCCCCUCGA------------U--------------UGUGAGC- -5'
5289 3' -57 NC_001798.1 + 41447 0.66 0.878142
Target:  5'- uGGGGGGUccaugccccgccGGGGGGGGCgguCGg-CGg -3'
miRNA:   3'- gCCCCUCA------------UCCCCCUCGauuGUgaGC- -5'
5289 3' -57 NC_001798.1 + 125655 0.66 0.870986
Target:  5'- gCGGGcGAGgcGGGGGcGGCUGAgG-UCa -3'
miRNA:   3'- -GCCC-CUCauCCCCC-UCGAUUgUgAGc -5'
5289 3' -57 NC_001798.1 + 31050 0.66 0.870986
Target:  5'- gCGGGGGucGGGcGGGGGUcgGGCACUa- -3'
miRNA:   3'- -GCCCCUcaUCC-CCCUCGa-UUGUGAgc -5'
5289 3' -57 NC_001798.1 + 67185 0.66 0.870986
Target:  5'- aGGGGGG-AGGaGGGGGCgggggGACAgcCUgGg -3'
miRNA:   3'- gCCCCUCaUCC-CCCUCGa----UUGU--GAgC- -5'
5289 3' -57 NC_001798.1 + 146353 0.66 0.863621
Target:  5'- aGGGGGGgGGGGGGAGagggaaAGCAa-CGg -3'
miRNA:   3'- gCCCCUCaUCCCCCUCga----UUGUgaGC- -5'
5289 3' -57 NC_001798.1 + 13046 0.66 0.863621
Target:  5'- cCGGGGGGaugcgcAGGGGGAGagcgUACUUGc -3'
miRNA:   3'- -GCCCCUCa-----UCCCCCUCgauuGUGAGC- -5'
5289 3' -57 NC_001798.1 + 2265 0.67 0.856053
Target:  5'- cCGGGGGGcGGGGcGGcGC-AGCGCgCGg -3'
miRNA:   3'- -GCCCCUCaUCCC-CCuCGaUUGUGaGC- -5'
5289 3' -57 NC_001798.1 + 129866 0.67 0.856053
Target:  5'- gGGGGAGgAGGGGG-GUgGugGC-CGa -3'
miRNA:   3'- gCCCCUCaUCCCCCuCGaUugUGaGC- -5'
5289 3' -57 NC_001798.1 + 27554 0.67 0.851416
Target:  5'- gGGGGAGgggcggcgcccgcGGGGGAGC-GGCcgGCUCc -3'
miRNA:   3'- gCCCCUCau-----------CCCCCUCGaUUG--UGAGc -5'
5289 3' -57 NC_001798.1 + 30056 0.67 0.848286
Target:  5'- gGGGGAcagGGGGGGAGacgAGgGgUCGg -3'
miRNA:   3'- gCCCCUca-UCCCCCUCga-UUgUgAGC- -5'
5289 3' -57 NC_001798.1 + 10587 0.67 0.848286
Target:  5'- gCGGGGAac-GGGGGAcuguauGCUAugGCgagCGg -3'
miRNA:   3'- -GCCCCUcauCCCCCU------CGAUugUGa--GC- -5'
5289 3' -57 NC_001798.1 + 15496 0.67 0.847499
Target:  5'- gGGGGcugguguGGUGGGGGGcGUUuuCGCUgCGg -3'
miRNA:   3'- gCCCC-------UCAUCCCCCuCGAuuGUGA-GC- -5'
5289 3' -57 NC_001798.1 + 59538 0.67 0.840329
Target:  5'- uGGGGAccccggaaGgcGGagaGGGGGCUGGgGCUCGc -3'
miRNA:   3'- gCCCCU--------CauCC---CCCUCGAUUgUGAGC- -5'
5289 3' -57 NC_001798.1 + 33490 0.67 0.840329
Target:  5'- aGGGGGGaaagugGGGcGGGGGCgagGGCGgUUGa -3'
miRNA:   3'- gCCCCUCa-----UCC-CCCUCGa--UUGUgAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.