Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5289 | 3' | -57 | NC_001798.1 | + | 113750 | 0.67 | 0.832187 |
Target: 5'- aCGGGGGuGUGGcGGGGGGgUAuuaaggcagggGCAgCUCGc -3' miRNA: 3'- -GCCCCU-CAUC-CCCCUCgAU-----------UGU-GAGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 30056 | 0.67 | 0.848286 |
Target: 5'- gGGGGAcagGGGGGGAGacgAGgGgUCGg -3' miRNA: 3'- gCCCCUca-UCCCCCUCga-UUgUgAGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 15496 | 0.67 | 0.847499 |
Target: 5'- gGGGGcugguguGGUGGGGGGcGUUuuCGCUgCGg -3' miRNA: 3'- gCCCC-------UCAUCCCCCuCGAuuGUGA-GC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 59538 | 0.67 | 0.840329 |
Target: 5'- uGGGGAccccggaaGgcGGagaGGGGGCUGGgGCUCGc -3' miRNA: 3'- gCCCCU--------CauCC---CCCUCGAUUgUGAGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 33490 | 0.67 | 0.840329 |
Target: 5'- aGGGGGGaaagugGGGcGGGGGCgagGGCGgUUGa -3' miRNA: 3'- gCCCCUCa-----UCC-CCCUCGa--UUGUgAGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 124504 | 0.67 | 0.835465 |
Target: 5'- uGGcGG---GGGGGGGGCUGcgggcgugucgucccACACUCGc -3' miRNA: 3'- gCC-CCucaUCCCCCUCGAU---------------UGUGAGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 111345 | 0.67 | 0.832187 |
Target: 5'- gCGGGGA--AGGGGGAcauGCgc-CGCUCc -3' miRNA: 3'- -GCCCCUcaUCCCCCU---CGauuGUGAGc -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 55983 | 0.67 | 0.823867 |
Target: 5'- cCGGGGAGgccgcgGGGGcgaGGGGCUggUAggCGg -3' miRNA: 3'- -GCCCCUCa-----UCCC---CCUCGAuuGUgaGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 101243 | 0.67 | 0.823867 |
Target: 5'- -aGGGAGgGGaGGGGAGCUGG-GCUUGu -3' miRNA: 3'- gcCCCUCaUC-CCCCUCGAUUgUGAGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 68163 | 0.67 | 0.823867 |
Target: 5'- gGGGGaAGUGGGaGGGGaagguCGCUCGg -3' miRNA: 3'- gCCCC-UCAUCCcCCUCgauu-GUGAGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 68588 | 0.67 | 0.823867 |
Target: 5'- uCGaGGGccgccuccAGUccgcgcGGGGGGAGCUGGCuCUUGa -3' miRNA: 3'- -GC-CCC--------UCA------UCCCCCUCGAUUGuGAGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 101871 | 0.67 | 0.815377 |
Target: 5'- aGGGGGGUgggcgugugcGGGGGaGGGCUGAUGuagCGg -3' miRNA: 3'- gCCCCUCA----------UCCCC-CUCGAUUGUga-GC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 10587 | 0.67 | 0.848286 |
Target: 5'- gCGGGGAac-GGGGGAcuguauGCUAugGCgagCGg -3' miRNA: 3'- -GCCCCUcauCCCCCU------CGAUugUGa--GC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 150085 | 0.67 | 0.832187 |
Target: 5'- uGGGGGGcgAGGGGcGAGCgcggGGCGg-CGg -3' miRNA: 3'- gCCCCUCa-UCCCC-CUCGa---UUGUgaGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 14318 | 0.66 | 0.891807 |
Target: 5'- uGGGGGGUGcGuGGGGAGgCguGCGgUCGc -3' miRNA: 3'- gCCCCUCAU-C-CCCCUC-GauUGUgAGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 21561 | 0.66 | 0.885084 |
Target: 5'- gGGGGGGgggGGGGGGAGggAAagGCa-- -3' miRNA: 3'- gCCCCUCa--UCCCCCUCgaUUg-UGagc -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 132499 | 0.66 | 0.880944 |
Target: 5'- gGGGcGGGUacggacucuccgcaAGGGGGAGCUgcugaucuacauGgacggguccggggcGCGCUCGg -3' miRNA: 3'- gCCC-CUCA--------------UCCCCCUCGA------------U--------------UGUGAGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 41447 | 0.66 | 0.878142 |
Target: 5'- uGGGGGGUccaugccccgccGGGGGGGGCgguCGg-CGg -3' miRNA: 3'- gCCCCUCA------------UCCCCCUCGauuGUgaGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 13046 | 0.66 | 0.863621 |
Target: 5'- cCGGGGGGaugcgcAGGGGGAGagcgUACUUGc -3' miRNA: 3'- -GCCCCUCa-----UCCCCCUCgauuGUGAGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 146353 | 0.66 | 0.863621 |
Target: 5'- aGGGGGGgGGGGGGAGagggaaAGCAa-CGg -3' miRNA: 3'- gCCCCUCaUCCCCCUCga----UUGUgaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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