Results 1 - 20 of 66 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5289 | 3' | -57 | NC_001798.1 | + | 32823 | 1.1 | 0.002122 |
Target: 5'- aCGGGGAGUAGGGGGAGCUAACACUCGg -3' miRNA: 3'- -GCCCCUCAUCCCCCUCGAUUGUGAGC- -5' |
|||||||
5289 | 3' | -57 | NC_001798.1 | + | 15188 | 0.82 | 0.162567 |
Target: 5'- uCGGGGGGUGGGGGG-GCUGGCGagcCGg -3' miRNA: 3'- -GCCCCUCAUCCCCCuCGAUUGUga-GC- -5' |
|||||||
5289 | 3' | -57 | NC_001798.1 | + | 111645 | 0.77 | 0.325424 |
Target: 5'- uCGGGGGcgcucGgcGGGGGGGCggaagaGACGCUCGg -3' miRNA: 3'- -GCCCCU-----CauCCCCCUCGa-----UUGUGAGC- -5' |
|||||||
5289 | 3' | -57 | NC_001798.1 | + | 85826 | 0.75 | 0.387668 |
Target: 5'- gGGGGGGgcGGGGGcgGGCgGGgGCUCGg -3' miRNA: 3'- gCCCCUCauCCCCC--UCGaUUgUGAGC- -5' |
|||||||
5289 | 3' | -57 | NC_001798.1 | + | 147614 | 0.74 | 0.430349 |
Target: 5'- gCGGGGAG-AGGGGGGGggGGCGggCGg -3' miRNA: 3'- -GCCCCUCaUCCCCCUCgaUUGUgaGC- -5' |
|||||||
5289 | 3' | -57 | NC_001798.1 | + | 32955 | 0.73 | 0.485015 |
Target: 5'- gGuGGGAGUGGGGGGGGggGACGgaCa -3' miRNA: 3'- gC-CCCUCAUCCCCCUCgaUUGUgaGc -5' |
|||||||
5289 | 3' | -57 | NC_001798.1 | + | 33172 | 0.73 | 0.513565 |
Target: 5'- aGGaGGAGgAGGGGGGGCgGGCACg-- -3' miRNA: 3'- gCC-CCUCaUCCCCCUCGaUUGUGagc -5' |
|||||||
5289 | 3' | -57 | NC_001798.1 | + | 10315 | 0.73 | 0.523236 |
Target: 5'- gGGGGGGUuggGGGGGGAacGCUGACcgGCgugCGu -3' miRNA: 3'- gCCCCUCA---UCCCCCU--CGAUUG--UGa--GC- -5' |
|||||||
5289 | 3' | -57 | NC_001798.1 | + | 39 | 0.72 | 0.532976 |
Target: 5'- gGGGGGGUguuuuuugGGGGGGGGCgcgAAgGCgggCGg -3' miRNA: 3'- gCCCCUCA--------UCCCCCUCGa--UUgUGa--GC- -5' |
|||||||
5289 | 3' | -57 | NC_001798.1 | + | 154377 | 0.72 | 0.532976 |
Target: 5'- gGGGGGGUguuuuuugGGGGGGGGCgcgAAgGCgggCGg -3' miRNA: 3'- gCCCCUCA--------UCCCCCUCGa--UUgUGa--GC- -5' |
|||||||
5289 | 3' | -57 | NC_001798.1 | + | 152174 | 0.72 | 0.562558 |
Target: 5'- cCGGGGAaaAGGGGGGGcCUGAgACcCGg -3' miRNA: 3'- -GCCCCUcaUCCCCCUC-GAUUgUGaGC- -5' |
|||||||
5289 | 3' | -57 | NC_001798.1 | + | 29918 | 0.72 | 0.562558 |
Target: 5'- gCGGGcGGUGGGcucGGGGGCggGACGCUUGa -3' miRNA: 3'- -GCCCcUCAUCC---CCCUCGa-UUGUGAGC- -5' |
|||||||
5289 | 3' | -57 | NC_001798.1 | + | 88037 | 0.71 | 0.588544 |
Target: 5'- cCGGGGAGggcagggccgcuGGGGGGGCgg--GCUCGu -3' miRNA: 3'- -GCCCCUCau----------CCCCCUCGauugUGAGC- -5' |
|||||||
5289 | 3' | -57 | NC_001798.1 | + | 5080 | 0.71 | 0.61272 |
Target: 5'- aGGGGcggcAGUGGGGGGggguGGUUGGCAgUCu -3' miRNA: 3'- gCCCC----UCAUCCCCC----UCGAUUGUgAGc -5' |
|||||||
5289 | 3' | -57 | NC_001798.1 | + | 32910 | 0.71 | 0.622822 |
Target: 5'- gGGGGAGgugGGGGGGGGgaAAgACg-- -3' miRNA: 3'- gCCCCUCa--UCCCCCUCgaUUgUGagc -5' |
|||||||
5289 | 3' | -57 | NC_001798.1 | + | 49771 | 0.71 | 0.632932 |
Target: 5'- gCGGGGAGUucccguggAGGcccggcgacugcGGGAGCUAaaccACAUUCGc -3' miRNA: 3'- -GCCCCUCA--------UCC------------CCCUCGAU----UGUGAGC- -5' |
|||||||
5289 | 3' | -57 | NC_001798.1 | + | 20920 | 0.7 | 0.653142 |
Target: 5'- uGGGGAu--GGGGGAGC-AugAUUCGc -3' miRNA: 3'- gCCCCUcauCCCCCUCGaUugUGAGC- -5' |
|||||||
5289 | 3' | -57 | NC_001798.1 | + | 11351 | 0.7 | 0.683313 |
Target: 5'- uCGGGGuuUGGGGGGGGUguuuggguggGAUcgcaGCUCGg -3' miRNA: 3'- -GCCCCucAUCCCCCUCGa---------UUG----UGAGC- -5' |
|||||||
5289 | 3' | -57 | NC_001798.1 | + | 26636 | 0.7 | 0.703235 |
Target: 5'- uGGGGAGUGacGGGGGGGgaAACuucCGg -3' miRNA: 3'- gCCCCUCAU--CCCCCUCgaUUGugaGC- -5' |
|||||||
5289 | 3' | -57 | NC_001798.1 | + | 27148 | 0.69 | 0.713113 |
Target: 5'- aCGGGGcgcGGgAGGGaGGGGCUGcuGCgaGCUCGg -3' miRNA: 3'- -GCCCC---UCaUCCC-CCUCGAU--UG--UGAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home