miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5289 3' -57 NC_001798.1 + 100781 0.69 0.713113
Target:  5'- -uGGGAGUAGuGGGGGGCgggugucGGCcguCUCGg -3'
miRNA:   3'- gcCCCUCAUC-CCCCUCGa------UUGu--GAGC- -5'
5289 3' -57 NC_001798.1 + 11708 0.69 0.742306
Target:  5'- uGGaGGGGUGGGucgggaggcuccGGGGGUguauACGCUCGa -3'
miRNA:   3'- gCC-CCUCAUCC------------CCCUCGau--UGUGAGC- -5'
5289 3' -57 NC_001798.1 + 33418 0.69 0.742306
Target:  5'- uCGGGGAGggaggagGGGGGGGGUcagccGCAC-Ca -3'
miRNA:   3'- -GCCCCUCa------UCCCCCUCGau---UGUGaGc -5'
5289 3' -57 NC_001798.1 + 101340 0.69 0.751862
Target:  5'- uGGGGG--GGGGGGGGCgUGugACUa- -3'
miRNA:   3'- gCCCCUcaUCCCCCUCG-AUugUGAgc -5'
5289 3' -57 NC_001798.1 + 9701 0.69 0.751862
Target:  5'- gCGGGcGGGUGGGcucgacGGGcucgGGCUGGCGCUgGg -3'
miRNA:   3'- -GCCC-CUCAUCC------CCC----UCGAUUGUGAgC- -5'
5289 3' -57 NC_001798.1 + 153762 0.68 0.761314
Target:  5'- uGGGGcGGaAGGGGGcGCUGcggcccGCGCUCc -3'
miRNA:   3'- gCCCC-UCaUCCCCCuCGAU------UGUGAGc -5'
5289 3' -57 NC_001798.1 + 56186 0.68 0.761314
Target:  5'- gGGGGGGUGGGGuGGGGUgugGugGgUaCGg -3'
miRNA:   3'- gCCCCUCAUCCC-CCUCGa--UugUgA-GC- -5'
5289 3' -57 NC_001798.1 + 148845 0.68 0.779874
Target:  5'- uCGGGG-GUGGGGGcGGCUu---CUCGu -3'
miRNA:   3'- -GCCCCuCAUCCCCcUCGAuuguGAGC- -5'
5289 3' -57 NC_001798.1 + 36100 0.68 0.788965
Target:  5'- gCGGGuGGUGGGGGGgggcccGGCU-GCGuCUCGc -3'
miRNA:   3'- -GCCCcUCAUCCCCC------UCGAuUGU-GAGC- -5'
5289 3' -57 NC_001798.1 + 11150 0.68 0.788965
Target:  5'- gGGGGGGgGGGGGGGGaaaUAACcACg-- -3'
miRNA:   3'- gCCCCUCaUCCCCCUCg--AUUG-UGagc -5'
5289 3' -57 NC_001798.1 + 15686 0.68 0.788965
Target:  5'- gGGGGAGUAGugguugcGGGGGCggucgguuccGCGCUUGg -3'
miRNA:   3'- gCCCCUCAUCc------CCCUCGau--------UGUGAGC- -5'
5289 3' -57 NC_001798.1 + 107864 0.68 0.788965
Target:  5'- gCGcGGGGGUucGGGGccaGGGCUGGCAC-CGu -3'
miRNA:   3'- -GC-CCCUCAu-CCCC---CUCGAUUGUGaGC- -5'
5289 3' -57 NC_001798.1 + 74517 0.68 0.788965
Target:  5'- gGGGcGAGaucGGGGGGCUcggGGCGCUCu -3'
miRNA:   3'- gCCC-CUCaucCCCCUCGA---UUGUGAGc -5'
5289 3' -57 NC_001798.1 + 35803 0.68 0.788965
Target:  5'- uCGGGcGGcggGGGGGGGGCgucGGgACUCGc -3'
miRNA:   3'- -GCCCcUCa--UCCCCCUCGa--UUgUGAGC- -5'
5289 3' -57 NC_001798.1 + 59656 0.68 0.797918
Target:  5'- uCGcGGAG-AGGGGGGGCg---ACUCGg -3'
miRNA:   3'- -GCcCCUCaUCCCCCUCGauugUGAGC- -5'
5289 3' -57 NC_001798.1 + 61160 0.68 0.806725
Target:  5'- gGGGGAGggggAGGGGGGGaagagagaGAUGgUCGg -3'
miRNA:   3'- gCCCCUCa---UCCCCCUCga------UUGUgAGC- -5'
5289 3' -57 NC_001798.1 + 85975 0.68 0.806725
Target:  5'- aCGGGGAGUucgAGGccgccgccGGGGcGCUGGCGCagGg -3'
miRNA:   3'- -GCCCCUCA---UCC--------CCCU-CGAUUGUGagC- -5'
5289 3' -57 NC_001798.1 + 101871 0.67 0.815377
Target:  5'- aGGGGGGUgggcgugugcGGGGGaGGGCUGAUGuagCGg -3'
miRNA:   3'- gCCCCUCA----------UCCCC-CUCGAUUGUga-GC- -5'
5289 3' -57 NC_001798.1 + 68163 0.67 0.823867
Target:  5'- gGGGGaAGUGGGaGGGGaagguCGCUCGg -3'
miRNA:   3'- gCCCC-UCAUCCcCCUCgauu-GUGAGC- -5'
5289 3' -57 NC_001798.1 + 101243 0.67 0.823867
Target:  5'- -aGGGAGgGGaGGGGAGCUGG-GCUUGu -3'
miRNA:   3'- gcCCCUCaUC-CCCCUCGAUUgUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.