miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5289 3' -57 NC_001798.1 + 56186 0.68 0.761314
Target:  5'- gGGGGGGUGGGGuGGGGUgugGugGgUaCGg -3'
miRNA:   3'- gCCCCUCAUCCC-CCUCGa--UugUgA-GC- -5'
5289 3' -57 NC_001798.1 + 101340 0.69 0.751862
Target:  5'- uGGGGG--GGGGGGGGCgUGugACUa- -3'
miRNA:   3'- gCCCCUcaUCCCCCUCG-AUugUGAgc -5'
5289 3' -57 NC_001798.1 + 9701 0.69 0.751862
Target:  5'- gCGGGcGGGUGGGcucgacGGGcucgGGCUGGCGCUgGg -3'
miRNA:   3'- -GCCC-CUCAUCC------CCC----UCGAUUGUGAgC- -5'
5289 3' -57 NC_001798.1 + 33418 0.69 0.742306
Target:  5'- uCGGGGAGggaggagGGGGGGGGUcagccGCAC-Ca -3'
miRNA:   3'- -GCCCCUCa------UCCCCCUCGau---UGUGaGc -5'
5289 3' -57 NC_001798.1 + 11708 0.69 0.742306
Target:  5'- uGGaGGGGUGGGucgggaggcuccGGGGGUguauACGCUCGa -3'
miRNA:   3'- gCC-CCUCAUCC------------CCCUCGau--UGUGAGC- -5'
5289 3' -57 NC_001798.1 + 27148 0.69 0.713113
Target:  5'- aCGGGGcgcGGgAGGGaGGGGCUGcuGCgaGCUCGg -3'
miRNA:   3'- -GCCCC---UCaUCCC-CCUCGAU--UG--UGAGC- -5'
5289 3' -57 NC_001798.1 + 100781 0.69 0.713113
Target:  5'- -uGGGAGUAGuGGGGGGCgggugucGGCcguCUCGg -3'
miRNA:   3'- gcCCCUCAUC-CCCCUCGa------UUGu--GAGC- -5'
5289 3' -57 NC_001798.1 + 26636 0.7 0.703235
Target:  5'- uGGGGAGUGacGGGGGGGgaAACuucCGg -3'
miRNA:   3'- gCCCCUCAU--CCCCCUCgaUUGugaGC- -5'
5289 3' -57 NC_001798.1 + 11351 0.7 0.683313
Target:  5'- uCGGGGuuUGGGGGGGGUguuuggguggGAUcgcaGCUCGg -3'
miRNA:   3'- -GCCCCucAUCCCCCUCGa---------UUG----UGAGC- -5'
5289 3' -57 NC_001798.1 + 20920 0.7 0.653142
Target:  5'- uGGGGAu--GGGGGAGC-AugAUUCGc -3'
miRNA:   3'- gCCCCUcauCCCCCUCGaUugUGAGC- -5'
5289 3' -57 NC_001798.1 + 49771 0.71 0.632932
Target:  5'- gCGGGGAGUucccguggAGGcccggcgacugcGGGAGCUAaaccACAUUCGc -3'
miRNA:   3'- -GCCCCUCA--------UCC------------CCCUCGAU----UGUGAGC- -5'
5289 3' -57 NC_001798.1 + 32910 0.71 0.622822
Target:  5'- gGGGGAGgugGGGGGGGGgaAAgACg-- -3'
miRNA:   3'- gCCCCUCa--UCCCCCUCgaUUgUGagc -5'
5289 3' -57 NC_001798.1 + 5080 0.71 0.61272
Target:  5'- aGGGGcggcAGUGGGGGGggguGGUUGGCAgUCu -3'
miRNA:   3'- gCCCC----UCAUCCCCC----UCGAUUGUgAGc -5'
5289 3' -57 NC_001798.1 + 88037 0.71 0.588544
Target:  5'- cCGGGGAGggcagggccgcuGGGGGGGCgg--GCUCGu -3'
miRNA:   3'- -GCCCCUCau----------CCCCCUCGauugUGAGC- -5'
5289 3' -57 NC_001798.1 + 152174 0.72 0.562558
Target:  5'- cCGGGGAaaAGGGGGGGcCUGAgACcCGg -3'
miRNA:   3'- -GCCCCUcaUCCCCCUC-GAUUgUGaGC- -5'
5289 3' -57 NC_001798.1 + 29918 0.72 0.562558
Target:  5'- gCGGGcGGUGGGcucGGGGGCggGACGCUUGa -3'
miRNA:   3'- -GCCCcUCAUCC---CCCUCGa-UUGUGAGC- -5'
5289 3' -57 NC_001798.1 + 154377 0.72 0.532976
Target:  5'- gGGGGGGUguuuuuugGGGGGGGGCgcgAAgGCgggCGg -3'
miRNA:   3'- gCCCCUCA--------UCCCCCUCGa--UUgUGa--GC- -5'
5289 3' -57 NC_001798.1 + 39 0.72 0.532976
Target:  5'- gGGGGGGUguuuuuugGGGGGGGGCgcgAAgGCgggCGg -3'
miRNA:   3'- gCCCCUCA--------UCCCCCUCGa--UUgUGa--GC- -5'
5289 3' -57 NC_001798.1 + 10315 0.73 0.523236
Target:  5'- gGGGGGGUuggGGGGGGAacGCUGACcgGCgugCGu -3'
miRNA:   3'- gCCCCUCA---UCCCCCU--CGAUUG--UGa--GC- -5'
5289 3' -57 NC_001798.1 + 33172 0.73 0.513565
Target:  5'- aGGaGGAGgAGGGGGGGCgGGCACg-- -3'
miRNA:   3'- gCC-CCUCaUCCCCCUCGaUUGUGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.