miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5289 3' -57 NC_001798.1 + 85975 0.68 0.806725
Target:  5'- aCGGGGAGUucgAGGccgccgccGGGGcGCUGGCGCagGg -3'
miRNA:   3'- -GCCCCUCA---UCC--------CCCU-CGAUUGUGagC- -5'
5289 3' -57 NC_001798.1 + 85826 0.75 0.387668
Target:  5'- gGGGGGGgcGGGGGcgGGCgGGgGCUCGg -3'
miRNA:   3'- gCCCCUCauCCCCC--UCGaUUgUGAGC- -5'
5289 3' -57 NC_001798.1 + 74517 0.68 0.788965
Target:  5'- gGGGcGAGaucGGGGGGCUcggGGCGCUCu -3'
miRNA:   3'- gCCC-CUCaucCCCCUCGA---UUGUGAGc -5'
5289 3' -57 NC_001798.1 + 73944 0.66 0.885084
Target:  5'- uGGuGGAG-GGGGGcGAGUgGACGCgcgCGg -3'
miRNA:   3'- gCC-CCUCaUCCCC-CUCGaUUGUGa--GC- -5'
5289 3' -57 NC_001798.1 + 68588 0.67 0.823867
Target:  5'- uCGaGGGccgccuccAGUccgcgcGGGGGGAGCUGGCuCUUGa -3'
miRNA:   3'- -GC-CCC--------UCA------UCCCCCUCGAUUGuGAGC- -5'
5289 3' -57 NC_001798.1 + 68163 0.67 0.823867
Target:  5'- gGGGGaAGUGGGaGGGGaagguCGCUCGg -3'
miRNA:   3'- gCCCC-UCAUCCcCCUCgauu-GUGAGC- -5'
5289 3' -57 NC_001798.1 + 67185 0.66 0.870986
Target:  5'- aGGGGGG-AGGaGGGGGCgggggGACAgcCUgGg -3'
miRNA:   3'- gCCCCUCaUCC-CCCUCGa----UUGU--GAgC- -5'
5289 3' -57 NC_001798.1 + 61160 0.68 0.806725
Target:  5'- gGGGGAGggggAGGGGGGGaagagagaGAUGgUCGg -3'
miRNA:   3'- gCCCCUCa---UCCCCCUCga------UUGUgAGC- -5'
5289 3' -57 NC_001798.1 + 59656 0.68 0.797918
Target:  5'- uCGcGGAG-AGGGGGGGCg---ACUCGg -3'
miRNA:   3'- -GCcCCUCaUCCCCCUCGauugUGAGC- -5'
5289 3' -57 NC_001798.1 + 59538 0.67 0.840329
Target:  5'- uGGGGAccccggaaGgcGGagaGGGGGCUGGgGCUCGc -3'
miRNA:   3'- gCCCCU--------CauCC---CCCUCGAUUgUGAGC- -5'
5289 3' -57 NC_001798.1 + 56186 0.68 0.761314
Target:  5'- gGGGGGGUGGGGuGGGGUgugGugGgUaCGg -3'
miRNA:   3'- gCCCCUCAUCCC-CCUCGa--UugUgA-GC- -5'
5289 3' -57 NC_001798.1 + 55983 0.67 0.823867
Target:  5'- cCGGGGAGgccgcgGGGGcgaGGGGCUggUAggCGg -3'
miRNA:   3'- -GCCCCUCa-----UCCC---CCUCGAuuGUgaGC- -5'
5289 3' -57 NC_001798.1 + 49771 0.71 0.632932
Target:  5'- gCGGGGAGUucccguggAGGcccggcgacugcGGGAGCUAaaccACAUUCGc -3'
miRNA:   3'- -GCCCCUCA--------UCC------------CCCUCGAU----UGUGAGC- -5'
5289 3' -57 NC_001798.1 + 41447 0.66 0.878142
Target:  5'- uGGGGGGUccaugccccgccGGGGGGGGCgguCGg-CGg -3'
miRNA:   3'- gCCCCUCA------------UCCCCCUCGauuGUgaGC- -5'
5289 3' -57 NC_001798.1 + 36100 0.68 0.788965
Target:  5'- gCGGGuGGUGGGGGGgggcccGGCU-GCGuCUCGc -3'
miRNA:   3'- -GCCCcUCAUCCCCC------UCGAuUGU-GAGC- -5'
5289 3' -57 NC_001798.1 + 35803 0.68 0.788965
Target:  5'- uCGGGcGGcggGGGGGGGGCgucGGgACUCGc -3'
miRNA:   3'- -GCCCcUCa--UCCCCCUCGa--UUgUGAGC- -5'
5289 3' -57 NC_001798.1 + 33490 0.67 0.840329
Target:  5'- aGGGGGGaaagugGGGcGGGGGCgagGGCGgUUGa -3'
miRNA:   3'- gCCCCUCa-----UCC-CCCUCGa--UUGUgAGC- -5'
5289 3' -57 NC_001798.1 + 33418 0.69 0.742306
Target:  5'- uCGGGGAGggaggagGGGGGGGGUcagccGCAC-Ca -3'
miRNA:   3'- -GCCCCUCa------UCCCCCUCGau---UGUGaGc -5'
5289 3' -57 NC_001798.1 + 33172 0.73 0.513565
Target:  5'- aGGaGGAGgAGGGGGGGCgGGCACg-- -3'
miRNA:   3'- gCC-CCUCaUCCCCCUCGaUUGUGagc -5'
5289 3' -57 NC_001798.1 + 32955 0.73 0.485015
Target:  5'- gGuGGGAGUGGGGGGGGggGACGgaCa -3'
miRNA:   3'- gC-CCCUCAUCCCCCUCgaUUGUgaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.