Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5289 | 3' | -57 | NC_001798.1 | + | 32823 | 1.1 | 0.002122 |
Target: 5'- aCGGGGAGUAGGGGGAGCUAACACUCGg -3' miRNA: 3'- -GCCCCUCAUCCCCCUCGAUUGUGAGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 2265 | 0.67 | 0.856053 |
Target: 5'- cCGGGGGGcGGGGcGGcGC-AGCGCgCGg -3' miRNA: 3'- -GCCCCUCaUCCC-CCuCGaUUGUGaGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 129866 | 0.67 | 0.856053 |
Target: 5'- gGGGGAGgAGGGGG-GUgGugGC-CGa -3' miRNA: 3'- gCCCCUCaUCCCCCuCGaUugUGaGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 27554 | 0.67 | 0.851416 |
Target: 5'- gGGGGAGgggcggcgcccgcGGGGGAGC-GGCcgGCUCc -3' miRNA: 3'- gCCCCUCau-----------CCCCCUCGaUUG--UGAGc -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 10587 | 0.67 | 0.848286 |
Target: 5'- gCGGGGAac-GGGGGAcuguauGCUAugGCgagCGg -3' miRNA: 3'- -GCCCCUcauCCCCCU------CGAUugUGa--GC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 30056 | 0.67 | 0.848286 |
Target: 5'- gGGGGAcagGGGGGGAGacgAGgGgUCGg -3' miRNA: 3'- gCCCCUca-UCCCCCUCga-UUgUgAGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 15496 | 0.67 | 0.847499 |
Target: 5'- gGGGGcugguguGGUGGGGGGcGUUuuCGCUgCGg -3' miRNA: 3'- gCCCC-------UCAUCCCCCuCGAuuGUGA-GC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 59538 | 0.67 | 0.840329 |
Target: 5'- uGGGGAccccggaaGgcGGagaGGGGGCUGGgGCUCGc -3' miRNA: 3'- gCCCCU--------CauCC---CCCUCGAUUgUGAGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 33490 | 0.67 | 0.840329 |
Target: 5'- aGGGGGGaaagugGGGcGGGGGCgagGGCGgUUGa -3' miRNA: 3'- gCCCCUCa-----UCC-CCCUCGa--UUGUgAGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 146353 | 0.66 | 0.863621 |
Target: 5'- aGGGGGGgGGGGGGAGagggaaAGCAa-CGg -3' miRNA: 3'- gCCCCUCaUCCCCCUCga----UUGUgaGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 13046 | 0.66 | 0.863621 |
Target: 5'- cCGGGGGGaugcgcAGGGGGAGagcgUACUUGc -3' miRNA: 3'- -GCCCCUCa-----UCCCCCUCgauuGUGAGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 67185 | 0.66 | 0.870986 |
Target: 5'- aGGGGGG-AGGaGGGGGCgggggGACAgcCUgGg -3' miRNA: 3'- gCCCCUCaUCC-CCCUCGa----UUGU--GAgC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 27284 | 0.66 | 0.891807 |
Target: 5'- gCGGGGGGgAGGGGcuGCcgcgaGCUCGg -3' miRNA: 3'- -GCCCCUCaUCCCCcuCGauug-UGAGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 14318 | 0.66 | 0.891807 |
Target: 5'- uGGGGGGUGcGuGGGGAGgCguGCGgUCGc -3' miRNA: 3'- gCCCCUCAU-C-CCCCUC-GauUGUgAGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 73944 | 0.66 | 0.885084 |
Target: 5'- uGGuGGAG-GGGGGcGAGUgGACGCgcgCGg -3' miRNA: 3'- gCC-CCUCaUCCCC-CUCGaUUGUGa--GC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 21561 | 0.66 | 0.885084 |
Target: 5'- gGGGGGGgggGGGGGGAGggAAagGCa-- -3' miRNA: 3'- gCCCCUCa--UCCCCCUCgaUUg-UGagc -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 132499 | 0.66 | 0.880944 |
Target: 5'- gGGGcGGGUacggacucuccgcaAGGGGGAGCUgcugaucuacauGgacggguccggggcGCGCUCGg -3' miRNA: 3'- gCCC-CUCA--------------UCCCCCUCGA------------U--------------UGUGAGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 41447 | 0.66 | 0.878142 |
Target: 5'- uGGGGGGUccaugccccgccGGGGGGGGCgguCGg-CGg -3' miRNA: 3'- gCCCCUCA------------UCCCCCUCGauuGUgaGC- -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 125655 | 0.66 | 0.870986 |
Target: 5'- gCGGGcGAGgcGGGGGcGGCUGAgG-UCa -3' miRNA: 3'- -GCCC-CUCauCCCCC-UCGAUUgUgAGc -5' |
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5289 | 3' | -57 | NC_001798.1 | + | 31050 | 0.66 | 0.870986 |
Target: 5'- gCGGGGGucGGGcGGGGGUcgGGCACUa- -3' miRNA: 3'- -GCCCCUcaUCC-CCCUCGa-UUGUGAgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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