miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5289 5' -62.5 NC_001798.1 + 69297 0.66 0.679729
Target:  5'- -gCGggGGgcGCCggggacggucaGCCCUCCcgcgcGCCGGGc -3'
miRNA:   3'- ggGCuuCCuuCGG-----------CGGGGGG-----UGGCCU- -5'
5289 5' -62.5 NC_001798.1 + 34129 0.66 0.679729
Target:  5'- gCCCGAcccgcGCCuGCCCCCC-CgGGAa -3'
miRNA:   3'- -GGGCUuccuuCGG-CGGGGGGuGgCCU- -5'
5289 5' -62.5 NC_001798.1 + 33432 0.66 0.679729
Target:  5'- --gGggGGggGUCaGCCgCaCCACCGGc -3'
miRNA:   3'- gggCuuCCuuCGG-CGGgG-GGUGGCCu -5'
5289 5' -62.5 NC_001798.1 + 96444 0.66 0.679729
Target:  5'- gCgCGAgGGGGAGCgGCUCCugggCCACCuGGAa -3'
miRNA:   3'- -GgGCU-UCCUUCGgCGGGG----GGUGG-CCU- -5'
5289 5' -62.5 NC_001798.1 + 15366 0.66 0.676848
Target:  5'- --gGggGGAaucGGCCGUgggcgcggcggaggCgCCCACCGGAc -3'
miRNA:   3'- gggCuuCCU---UCGGCG--------------GgGGGUGGCCU- -5'
5289 5' -62.5 NC_001798.1 + 28211 0.66 0.673964
Target:  5'- gCCGGAGGccccgcacgccgcGCCugccgccgccuGCCCCCCGCCGc- -3'
miRNA:   3'- gGGCUUCCuu-----------CGG-----------CGGGGGGUGGCcu -5'
5289 5' -62.5 NC_001798.1 + 104585 0.66 0.670114
Target:  5'- uCUCG-GGGAAcGUCGCCCggggCCGCCGGu -3'
miRNA:   3'- -GGGCuUCCUU-CGGCGGGg---GGUGGCCu -5'
5289 5' -62.5 NC_001798.1 + 7270 0.66 0.670114
Target:  5'- uCCCGAAGccaucuGAAGCCGUCCgaCCAUCa-- -3'
miRNA:   3'- -GGGCUUC------CUUCGGCGGGg-GGUGGccu -5'
5289 5' -62.5 NC_001798.1 + 22969 0.66 0.670114
Target:  5'- cCCCGGcguccgGGGAGGCCGUCgacgagCCUGCCGcGGa -3'
miRNA:   3'- -GGGCU------UCCUUCGGCGGg-----GGGUGGC-CU- -5'
5289 5' -62.5 NC_001798.1 + 52635 0.66 0.670114
Target:  5'- cCCCGAGGuGGGCaCGuacaCCCCCCugCGc- -3'
miRNA:   3'- -GGGCUUCcUUCG-GC----GGGGGGugGCcu -5'
5289 5' -62.5 NC_001798.1 + 150801 0.66 0.670114
Target:  5'- gCCCGcaacGGGgcGCCGCCgcugcugcugCUCCGCgGGGc -3'
miRNA:   3'- -GGGCu---UCCuuCGGCGG----------GGGGUGgCCU- -5'
5289 5' -62.5 NC_001798.1 + 64099 0.66 0.670114
Target:  5'- aCCGGAaucGggGCCGCCCCggCCcCCGa- -3'
miRNA:   3'- gGGCUUc--CuuCGGCGGGG--GGuGGCcu -5'
5289 5' -62.5 NC_001798.1 + 96162 0.66 0.660472
Target:  5'- aCUCGccauGGcGGCCGCgCCCCCgGCCGcGGu -3'
miRNA:   3'- -GGGCuu--CCuUCGGCG-GGGGG-UGGC-CU- -5'
5289 5' -62.5 NC_001798.1 + 7479 0.66 0.660472
Target:  5'- aCCCGcGGGcuugccuAGCCcgguccccuacGCCCCCCucggcagcCCGGAc -3'
miRNA:   3'- -GGGCuUCCu------UCGG-----------CGGGGGGu-------GGCCU- -5'
5289 5' -62.5 NC_001798.1 + 18260 0.66 0.660472
Target:  5'- gCCCGggGGccAGGUaCGCauCCUCCGCgGGGg -3'
miRNA:   3'- -GGGCuuCC--UUCG-GCG--GGGGGUGgCCU- -5'
5289 5' -62.5 NC_001798.1 + 20768 0.66 0.660472
Target:  5'- uCCCGcGGGGAGCgacggCGCCCgCCGCguaGGu -3'
miRNA:   3'- -GGGCuUCCUUCG-----GCGGGgGGUGg--CCu -5'
5289 5' -62.5 NC_001798.1 + 25079 0.66 0.660472
Target:  5'- cCCCGGccAGGgcGCCGCCgggcggcgCCCCGCg--- -3'
miRNA:   3'- -GGGCU--UCCuuCGGCGG--------GGGGUGgccu -5'
5289 5' -62.5 NC_001798.1 + 38497 0.66 0.660472
Target:  5'- cCCCGGAGucu-CCGCCCcaCCCGCCGc- -3'
miRNA:   3'- -GGGCUUCcuucGGCGGG--GGGUGGCcu -5'
5289 5' -62.5 NC_001798.1 + 78326 0.66 0.660472
Target:  5'- aCCCGGAGGccaccgcgGAGCUGgUCCggACCGGGg -3'
miRNA:   3'- -GGGCUUCC--------UUCGGCgGGGggUGGCCU- -5'
5289 5' -62.5 NC_001798.1 + 81176 0.66 0.660472
Target:  5'- uCCUGAcgGGGGAGCUGUUCCCgGgacacCCGGu -3'
miRNA:   3'- -GGGCU--UCCUUCGGCGGGGGgU-----GGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.