miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5291 3' -62.1 NC_001798.1 + 48147 0.66 0.678354
Target:  5'- gUCUUCUgCGCCGCGGucggGCgCCUggcggCCAc -3'
miRNA:   3'- -GGAAGAgGCGGCGCC----UGgGGGa----GGUa -5'
5291 3' -62.1 NC_001798.1 + 153173 0.66 0.678354
Target:  5'- uCCggggCUCCGCCGgcCGaGGCCgCCCUCg-- -3'
miRNA:   3'- -GGaa--GAGGCGGC--GC-CUGG-GGGAGgua -5'
5291 3' -62.1 NC_001798.1 + 34868 0.66 0.675439
Target:  5'- gCCUUCcgcCCGgCGCcgggcggcuacccgGGACCCCCggCCGg -3'
miRNA:   3'- -GGAAGa--GGCgGCG--------------CCUGGGGGa-GGUa -5'
5291 3' -62.1 NC_001798.1 + 47991 0.66 0.668624
Target:  5'- gCCgaCUCCGCCGUGcuccuagacGCCCCCgcucCCAc -3'
miRNA:   3'- -GGaaGAGGCGGCGCc--------UGGGGGa---GGUa -5'
5291 3' -62.1 NC_001798.1 + 35171 0.66 0.66765
Target:  5'- uCCUUCUCCGgaguCCcucucgaucggcgGCGGGCCCCUgcgUUCGUu -3'
miRNA:   3'- -GGAAGAGGC----GG-------------CGCCUGGGGG---AGGUA- -5'
5291 3' -62.1 NC_001798.1 + 105178 0.66 0.6657
Target:  5'- aCCUccaUCUCCGCggcggcggggccCGCGGugggcgacggcgcuGCCCCgUCCGc -3'
miRNA:   3'- -GGA---AGAGGCG------------GCGCC--------------UGGGGgAGGUa -5'
5291 3' -62.1 NC_001798.1 + 132138 0.66 0.662773
Target:  5'- cCCUgcgCCGCCGgGGgccggcgggcggggcGCCCCCcCCGg -3'
miRNA:   3'- -GGAagaGGCGGCgCC---------------UGGGGGaGGUa -5'
5291 3' -62.1 NC_001798.1 + 91088 0.66 0.658867
Target:  5'- gCCggaggCggCCGUCGUGGACCCCggugcgcugCUCCGc -3'
miRNA:   3'- -GGaa---Ga-GGCGGCGCCUGGGG---------GAGGUa -5'
5291 3' -62.1 NC_001798.1 + 111477 0.66 0.655936
Target:  5'- gCCUgCUCCcggaacccaugcacGgCGCGGACCUCCUCgCGc -3'
miRNA:   3'- -GGAaGAGG--------------CgGCGCCUGGGGGAG-GUa -5'
5291 3' -62.1 NC_001798.1 + 134741 0.66 0.649091
Target:  5'- -gUUCUCCGCCcCGGcgcuggucGCCCuCUUCCGg -3'
miRNA:   3'- ggAAGAGGCGGcGCC--------UGGG-GGAGGUa -5'
5291 3' -62.1 NC_001798.1 + 466 0.66 0.649091
Target:  5'- gCCgcCUCCcCCGCGG-CCgCCUCCc- -3'
miRNA:   3'- -GGaaGAGGcGGCGCCuGGgGGAGGua -5'
5291 3' -62.1 NC_001798.1 + 147354 0.66 0.639302
Target:  5'- cCCgUC-CCGCCGC--GCCCCUUCCc- -3'
miRNA:   3'- -GGaAGaGGCGGCGccUGGGGGAGGua -5'
5291 3' -62.1 NC_001798.1 + 87717 0.66 0.639302
Target:  5'- ---cCUCCGCCGUagcgccGGCCCCCgCCGg -3'
miRNA:   3'- ggaaGAGGCGGCGc-----CUGGGGGaGGUa -5'
5291 3' -62.1 NC_001798.1 + 32089 0.66 0.629507
Target:  5'- --gUCUCCgucgucccagGCCGCGGucgccgccGCCUCCUCCu- -3'
miRNA:   3'- ggaAGAGG----------CGGCGCC--------UGGGGGAGGua -5'
5291 3' -62.1 NC_001798.1 + 84198 0.66 0.629507
Target:  5'- gUCUgCUCCGCCGUGaucgcGCCCCCcggggcgCCGUg -3'
miRNA:   3'- -GGAaGAGGCGGCGCc----UGGGGGa------GGUA- -5'
5291 3' -62.1 NC_001798.1 + 39490 0.66 0.619715
Target:  5'- gCCUcg-UgGCCGCGGGCCCCCggagaCGUc -3'
miRNA:   3'- -GGAagaGgCGGCGCCUGGGGGag---GUA- -5'
5291 3' -62.1 NC_001798.1 + 29008 0.66 0.619715
Target:  5'- aCCgcgCgCCGCCgcGCGGGCCCggaCUCCGc -3'
miRNA:   3'- -GGaa-GaGGCGG--CGCCUGGGg--GAGGUa -5'
5291 3' -62.1 NC_001798.1 + 21660 0.66 0.619715
Target:  5'- gCCggcgUCUCugucuCGCUGUGG-CCCCCUUCGc -3'
miRNA:   3'- -GGa---AGAG-----GCGGCGCCuGGGGGAGGUa -5'
5291 3' -62.1 NC_001798.1 + 48101 0.67 0.609931
Target:  5'- cCCcaCggCGCCGUGGACCCCCcggguggCCGg -3'
miRNA:   3'- -GGaaGagGCGGCGCCUGGGGGa------GGUa -5'
5291 3' -62.1 NC_001798.1 + 28232 0.67 0.609931
Target:  5'- gCCUg--CCGCCGCcuGCCCCCcgCCGc -3'
miRNA:   3'- -GGAagaGGCGGCGccUGGGGGa-GGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.