miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5291 5' -53.5 NC_001798.1 + 35837 0.66 0.970551
Target:  5'- ---aGGGCcGGAGAAUGgaaGGCGAgGg -3'
miRNA:   3'- aauaCCCGuCCUCUUGCug-CUGCUgC- -5'
5291 5' -53.5 NC_001798.1 + 58799 0.66 0.970551
Target:  5'- ---gGGGCgaggaggaaaAGGGGAugGACGuCGuCGg -3'
miRNA:   3'- aauaCCCG----------UCCUCUugCUGCuGCuGC- -5'
5291 5' -53.5 NC_001798.1 + 81079 0.66 0.96996
Target:  5'- uUUGUGGcuaccGCGGGGGAcguucucGCGGCGAgcgccgcCGACGc -3'
miRNA:   3'- -AAUACC-----CGUCCUCU-------UGCUGCU-------GCUGC- -5'
5291 5' -53.5 NC_001798.1 + 26400 0.66 0.96751
Target:  5'- ---cGGGCGcugcucGAGccCGACGGCGACGc -3'
miRNA:   3'- aauaCCCGUc-----CUCuuGCUGCUGCUGC- -5'
5291 5' -53.5 NC_001798.1 + 143707 0.66 0.96751
Target:  5'- ---cGGGacuuGGAGAGgGGCGACGGg- -3'
miRNA:   3'- aauaCCCgu--CCUCUUgCUGCUGCUgc -5'
5291 5' -53.5 NC_001798.1 + 122233 0.66 0.96751
Target:  5'- ---cGGGUGGGAagcucuGGcCGGCGGCGACc -3'
miRNA:   3'- aauaCCCGUCCU------CUuGCUGCUGCUGc -5'
5291 5' -53.5 NC_001798.1 + 73943 0.66 0.96751
Target:  5'- --cUGGuGgAGGGGGGCGA-GugGACGc -3'
miRNA:   3'- aauACC-CgUCCUCUUGCUgCugCUGC- -5'
5291 5' -53.5 NC_001798.1 + 21954 0.66 0.96751
Target:  5'- --uUGGGC-GGAGcGCGG-GAUGACGc -3'
miRNA:   3'- aauACCCGuCCUCuUGCUgCUGCUGC- -5'
5291 5' -53.5 NC_001798.1 + 84403 0.66 0.964252
Target:  5'- ---aGGGCGGGuuGGAUGGCGAguaggggccCGACu -3'
miRNA:   3'- aauaCCCGUCCu-CUUGCUGCU---------GCUGc -5'
5291 5' -53.5 NC_001798.1 + 2538 0.66 0.964252
Target:  5'- ---gGGGCGGGGGGcGCGGCccccgcgggaggGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCU-UGCUG------------CUGCUGc -5'
5291 5' -53.5 NC_001798.1 + 64738 0.66 0.964252
Target:  5'- -gGUGGGCAuGAGcGCGAUGAacUGGCu -3'
miRNA:   3'- aaUACCCGUcCUCuUGCUGCU--GCUGc -5'
5291 5' -53.5 NC_001798.1 + 2254 0.66 0.963915
Target:  5'- ---cGGGCGcgccgccGGGGGGCGG-GGCGGCGc -3'
miRNA:   3'- aauaCCCGU-------CCUCUUGCUgCUGCUGC- -5'
5291 5' -53.5 NC_001798.1 + 52504 0.66 0.960773
Target:  5'- ---cGGcGCAGGG--ACGACG-CGGCGg -3'
miRNA:   3'- aauaCC-CGUCCUcuUGCUGCuGCUGC- -5'
5291 5' -53.5 NC_001798.1 + 85814 0.66 0.960773
Target:  5'- ---gGGGCgaugacggGGGGGGGCGGgGGCGgGCGg -3'
miRNA:   3'- aauaCCCG--------UCCUCUUGCUgCUGC-UGC- -5'
5291 5' -53.5 NC_001798.1 + 111183 0.66 0.957067
Target:  5'- --uUGGGCGGGAGGAgGuCGAacaUGAgGa -3'
miRNA:   3'- aauACCCGUCCUCUUgCuGCU---GCUgC- -5'
5291 5' -53.5 NC_001798.1 + 73620 0.66 0.957067
Target:  5'- gUGUGGuuAGGGGGACGAacaGGCGGu- -3'
miRNA:   3'- aAUACCcgUCCUCUUGCUg--CUGCUgc -5'
5291 5' -53.5 NC_001798.1 + 145835 0.67 0.953128
Target:  5'- gUcgGGGUGGGAGugGugGugGGgGACa -3'
miRNA:   3'- aAuaCCCGUCCUC--UugCugCUgCUGc -5'
5291 5' -53.5 NC_001798.1 + 4412 0.67 0.953128
Target:  5'- ---gGGGCGccGGGGGucGCGGCGACaGGCu -3'
miRNA:   3'- aauaCCCGU--CCUCU--UGCUGCUG-CUGc -5'
5291 5' -53.5 NC_001798.1 + 76662 0.67 0.948953
Target:  5'- ---aGGGCcauGGAGGcggccaaGAUGACGGCGg -3'
miRNA:   3'- aauaCCCGu--CCUCUug-----CUGCUGCUGC- -5'
5291 5' -53.5 NC_001798.1 + 67704 0.67 0.948953
Target:  5'- ---cGGGCccguGGGAG-GCGGgGugGGCGg -3'
miRNA:   3'- aauaCCCG----UCCUCuUGCUgCugCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.