Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5294 | 3' | -56.4 | NC_001798.1 | + | 11672 | 0.66 | 0.896541 |
Target: 5'- cGGGUCUCGgggggaggacgggGGUGUCGUuguccguggagGGGUGGGu -3' miRNA: 3'- uCCCAGAGUaa-----------UCGUAGCG-----------CCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 31019 | 0.66 | 0.88023 |
Target: 5'- gGGGGUCgggcgGGgGUCGggcggggguCGGGCGGGg -3' miRNA: 3'- -UCCCAGaguaaUCgUAGC---------GCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 30975 | 0.66 | 0.88023 |
Target: 5'- gGGGGUCgggcgGGgGUCGggcggggguCGGGCGGGg -3' miRNA: 3'- -UCCCAGaguaaUCgUAGC---------GCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 78951 | 0.66 | 0.88023 |
Target: 5'- uGGGGUCgcuUUGGCcgCGUccGGGgGGGc -3' miRNA: 3'- -UCCCAGaguAAUCGuaGCG--CCCgCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 153638 | 0.66 | 0.8781 |
Target: 5'- gGGGGUCggaggggaggCGUaccuucccgcgcggcGCGUcCGCGGGCGGGg -3' miRNA: 3'- -UCCCAGa---------GUAau-------------CGUA-GCGCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 5596 | 0.66 | 0.873055 |
Target: 5'- cGaGGUCgcccCGUUGGUc-CGCGGGCGGc -3' miRNA: 3'- uC-CCAGa---GUAAUCGuaGCGCCCGCCu -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 11615 | 0.67 | 0.865666 |
Target: 5'- cGGGGcuaUCUCGcc-GC-UCGCGGGCGcGGg -3' miRNA: 3'- -UCCC---AGAGUaauCGuAGCGCCCGC-CU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 150419 | 0.67 | 0.850263 |
Target: 5'- cGGGGg--CGgcGGCggCGCgGGGCGGAc -3' miRNA: 3'- -UCCCagaGUaaUCGuaGCG-CCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 26929 | 0.67 | 0.850263 |
Target: 5'- nGGGUCgggcgGGCGggGuCGGGCGGGc -3' miRNA: 3'- uCCCAGaguaaUCGUagC-GCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 35790 | 0.67 | 0.842262 |
Target: 5'- uGGGUCUCcuucgucgGGCggCGgGGGgGGGg -3' miRNA: 3'- uCCCAGAGuaa-----UCGuaGCgCCCgCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 102045 | 0.67 | 0.842262 |
Target: 5'- gGGGGUCUCcgUGucuGCGUgG-GGGUGGu -3' miRNA: 3'- -UCCCAGAGuaAU---CGUAgCgCCCGCCu -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 134349 | 0.67 | 0.842262 |
Target: 5'- gAGGGUCgaaagGGCGUCGUGGGgcccgcCGGc -3' miRNA: 3'- -UCCCAGaguaaUCGUAGCGCCC------GCCu -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 143657 | 0.67 | 0.825696 |
Target: 5'- cGGGUUUCGaggUAGCGauUCGCGGcGaGGAa -3' miRNA: 3'- uCCCAGAGUa--AUCGU--AGCGCC-CgCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 34305 | 0.68 | 0.817145 |
Target: 5'- cGGGUU-----GGC-UCGCGGGCGGu -3' miRNA: 3'- uCCCAGaguaaUCGuAGCGCCCGCCu -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 99249 | 0.68 | 0.813678 |
Target: 5'- gGGGGUggcacaccaccgacCUCA--AGUAcaaccccUCGCGGGUGGAg -3' miRNA: 3'- -UCCCA--------------GAGUaaUCGU-------AGCGCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 29862 | 0.68 | 0.797756 |
Target: 5'- cGGGUCUCAggcccccccUUuuccccggaccacccGGCugcggguugggggugGUCGCGGGCGGu -3' miRNA: 3'- uCCCAGAGU---------AA---------------UCG---------------UAGCGCCCGCCu -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 72674 | 0.68 | 0.790521 |
Target: 5'- gAGGGUaaCGUgcUGGcCGUCGUGcGGCGGGa -3' miRNA: 3'- -UCCCAgaGUA--AUC-GUAGCGC-CCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 111821 | 0.68 | 0.790521 |
Target: 5'- cGGGcGUC-CAggGGCuggCGCgGGGCGGGa -3' miRNA: 3'- -UCC-CAGaGUaaUCGua-GCG-CCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 22272 | 0.69 | 0.760715 |
Target: 5'- cGGGcgCUaaugagauGCcgCGCGGGCGGAg -3' miRNA: 3'- uCCCa-GAguaau---CGuaGCGCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 4205 | 0.69 | 0.75307 |
Target: 5'- cGuGGUCUgCGgcgcUGGCGggggCGCGGGCGGc -3' miRNA: 3'- uC-CCAGA-GUa---AUCGUa---GCGCCCGCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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