Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5294 | 3' | -56.4 | NC_001798.1 | + | 22227 | 1.09 | 0.002541 |
Target: 5'- gAGGGUCUCAUUAGCAUCGCGGGCGGAa -3' miRNA: 3'- -UCCCAGAGUAAUCGUAGCGCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 145785 | 0.75 | 0.402024 |
Target: 5'- cGGGGUCcacaCAggAGCG-CGCGGGCGGc -3' miRNA: 3'- -UCCCAGa---GUaaUCGUaGCGCCCGCCu -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 5434 | 0.75 | 0.410628 |
Target: 5'- cGGcaUCUCAUUAGCGcccggCGCGGGCGGc -3' miRNA: 3'- uCCc-AGAGUAAUCGUa----GCGCCCGCCu -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 146082 | 0.75 | 0.437112 |
Target: 5'- aGGGGUC-Cgg-GGCGagGCGGGCGGGc -3' miRNA: 3'- -UCCCAGaGuaaUCGUagCGCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 15460 | 0.74 | 0.473896 |
Target: 5'- gGGGGUCgCGUgGGUAgaCGUGGGCGGGg -3' miRNA: 3'- -UCCCAGaGUAaUCGUa-GCGCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 26808 | 0.72 | 0.551656 |
Target: 5'- gGGGGUCgggCGggcgGGgGUCggGCGGGCGGGg -3' miRNA: 3'- -UCCCAGa--GUaa--UCgUAG--CGCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 26853 | 0.72 | 0.551656 |
Target: 5'- gGGGGUCgggCGggcgGGgGUCggGCGGGCGGGg -3' miRNA: 3'- -UCCCAGa--GUaa--UCgUAG--CGCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 26898 | 0.72 | 0.551656 |
Target: 5'- gGGGGUCgggCGggcgGGgGUCggGCGGGCGGGg -3' miRNA: 3'- -UCCCAGa--GUaa--UCgUAG--CGCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 26957 | 0.72 | 0.551656 |
Target: 5'- gGGGGUCgggCGggcgGGgGUCggGCGGGCGGGg -3' miRNA: 3'- -UCCCAGa--GUaa--UCgUAG--CGCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 27002 | 0.72 | 0.551656 |
Target: 5'- gGGGGUCgggCGggcgGGgGUCggGCGGGCGGGg -3' miRNA: 3'- -UCCCAGa--GUaa--UCgUAG--CGCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 63250 | 0.72 | 0.56168 |
Target: 5'- gAGGGgaaagcUGGCGUCGgGGGCGGGg -3' miRNA: 3'- -UCCCagaguaAUCGUAGCgCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 45920 | 0.72 | 0.571752 |
Target: 5'- cGGGUCUCGgggggUGGCgGUCGCGucCGGAa -3' miRNA: 3'- uCCCAGAGUa----AUCG-UAGCGCccGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 30942 | 0.71 | 0.6124 |
Target: 5'- gGGGGUCg----GGCGggggGCGGGCGGGg -3' miRNA: 3'- -UCCCAGaguaaUCGUag--CGCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 148276 | 0.71 | 0.622618 |
Target: 5'- gAGGGgCgggCGUggcgGGCAggugUGCGGGCGGGg -3' miRNA: 3'- -UCCCaGa--GUAa---UCGUa---GCGCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 148383 | 0.71 | 0.622618 |
Target: 5'- gAGGGgCgggCGUggcgGGCAggugUGCGGGCGGGg -3' miRNA: 3'- -UCCCaGa--GUAa---UCGUa---GCGCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 83650 | 0.71 | 0.622618 |
Target: 5'- gAGGGgaugugcggCUCGcgGGCGUCugggaugcacugGCGGGCGGGa -3' miRNA: 3'- -UCCCa--------GAGUaaUCGUAG------------CGCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 147158 | 0.71 | 0.653281 |
Target: 5'- gGGGGUCcCGggUAGCcgcccggCGcCGGGCGGAa -3' miRNA: 3'- -UCCCAGaGUa-AUCGua-----GC-GCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 15873 | 0.7 | 0.683792 |
Target: 5'- cGGGGUCUguccgCAggGcGCGUcgaaacCGCGGGCGGGg -3' miRNA: 3'- -UCCCAGA-----GUaaU-CGUA------GCGCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 105597 | 0.7 | 0.693889 |
Target: 5'- cGGGUC-CAUguucgagGGCG--GCGGGCGGGc -3' miRNA: 3'- uCCCAGaGUAa------UCGUagCGCCCGCCU- -5' |
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5294 | 3' | -56.4 | NC_001798.1 | + | 32428 | 0.7 | 0.703934 |
Target: 5'- gGGGGUCUCG--AGCGUCGUGgcccuGGCGc- -3' miRNA: 3'- -UCCCAGAGUaaUCGUAGCGC-----CCGCcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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