Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5295 | 3' | -51.6 | NC_001798.1 | + | 143119 | 0.66 | 0.985259 |
Target: 5'- cGgCGGUGCUcCGCGCU-UGCgCUGGc- -3' miRNA: 3'- -CgGUCACGA-GCGUGAaACGgGAUUau -5' |
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5295 | 3' | -51.6 | NC_001798.1 | + | 121146 | 0.66 | 0.983357 |
Target: 5'- gGCCGG-GCcaugaacgCGCACUUUGCCa----- -3' miRNA: 3'- -CGGUCaCGa-------GCGUGAAACGGgauuau -5' |
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5295 | 3' | -51.6 | NC_001798.1 | + | 84714 | 0.66 | 0.979003 |
Target: 5'- cGCC-GUGCaCGCACgcggUGUCCUGc-- -3' miRNA: 3'- -CGGuCACGaGCGUGaa--ACGGGAUuau -5' |
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5295 | 3' | -51.6 | NC_001798.1 | + | 41804 | 0.66 | 0.979003 |
Target: 5'- uCCGG-GCcgUCGCGCgacUUGCCCUGc-- -3' miRNA: 3'- cGGUCaCG--AGCGUGa--AACGGGAUuau -5' |
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5295 | 3' | -51.6 | NC_001798.1 | + | 24463 | 0.67 | 0.973858 |
Target: 5'- cGCCgcgggGGUGCUCGCc----GCCCUGGg- -3' miRNA: 3'- -CGG-----UCACGAGCGugaaaCGGGAUUau -5' |
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5295 | 3' | -51.6 | NC_001798.1 | + | 52431 | 0.67 | 0.967854 |
Target: 5'- gGCC-GUGUaCGCGCUgcacacgGCCCUGGc- -3' miRNA: 3'- -CGGuCACGaGCGUGAaa-----CGGGAUUau -5' |
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5295 | 3' | -51.6 | NC_001798.1 | + | 77224 | 0.67 | 0.960931 |
Target: 5'- gGCC-GUGCgggCGCAUggcGCCCUGGc- -3' miRNA: 3'- -CGGuCACGa--GCGUGaaaCGGGAUUau -5' |
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5295 | 3' | -51.6 | NC_001798.1 | + | 120493 | 0.67 | 0.960931 |
Target: 5'- uGCCGGUGCcggaggCGCGCguguugGCCgUGAa- -3' miRNA: 3'- -CGGUCACGa-----GCGUGaaa---CGGgAUUau -5' |
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5295 | 3' | -51.6 | NC_001798.1 | + | 35610 | 0.68 | 0.939306 |
Target: 5'- uCCGGggGCUcCGCACUcUGCCCg---- -3' miRNA: 3'- cGGUCa-CGA-GCGUGAaACGGGauuau -5' |
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5295 | 3' | -51.6 | NC_001798.1 | + | 5807 | 0.69 | 0.904779 |
Target: 5'- cGCgaAGcGUUCGCACUUcGUCCUAAUAg -3' miRNA: 3'- -CGg-UCaCGAGCGUGAAaCGGGAUUAU- -5' |
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5295 | 3' | -51.6 | NC_001798.1 | + | 5669 | 0.69 | 0.904779 |
Target: 5'- cGCgaAGcGUUCGCACUUcGUCCUAAUAg -3' miRNA: 3'- -CGg-UCaCGAGCGUGAAaCGGGAUUAU- -5' |
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5295 | 3' | -51.6 | NC_001798.1 | + | 70560 | 0.7 | 0.891189 |
Target: 5'- cGCCGG-GCUgCGCACcacggcgGCCCUGGg- -3' miRNA: 3'- -CGGUCaCGA-GCGUGaaa----CGGGAUUau -5' |
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5295 | 3' | -51.6 | NC_001798.1 | + | 119230 | 0.72 | 0.799852 |
Target: 5'- cCCGGcUGCUCGCGCUgagcGCCCa---- -3' miRNA: 3'- cGGUC-ACGAGCGUGAaa--CGGGauuau -5' |
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5295 | 3' | -51.6 | NC_001798.1 | + | 91694 | 0.77 | 0.508426 |
Target: 5'- cGCgaAGcGUUCGCACUUUGUCCUAAUAg -3' miRNA: 3'- -CGg-UCaCGAGCGUGAAACGGGAUUAU- -5' |
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5295 | 3' | -51.6 | NC_001798.1 | + | 21992 | 1.01 | 0.02052 |
Target: 5'- cGCCAGcGCUCGCACUUUGCCCUAAUAa -3' miRNA: 3'- -CGGUCaCGAGCGUGAAACGGGAUUAU- -5' |
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5295 | 3' | -51.6 | NC_001798.1 | + | 21855 | 1.1 | 0.005241 |
Target: 5'- cGCCAGUGCUCGCACUUUGCCCUAAUAa -3' miRNA: 3'- -CGGUCACGAGCGUGAAACGGGAUUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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