miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5295 5' -48.8 NC_001798.1 + 136787 0.66 0.998641
Target:  5'- aGCUGcggAGGA-GAAGgcaGCGGACGCg- -3'
miRNA:   3'- -UGAUaa-UCCUgCUUCa--CGCUUGCGaa -5'
5295 5' -48.8 NC_001798.1 + 48937 0.66 0.998352
Target:  5'- cCUGUUGGucGACGAucuguuUGCGGACGCg- -3'
miRNA:   3'- uGAUAAUC--CUGCUuc----ACGCUUGCGaa -5'
5295 5' -48.8 NC_001798.1 + 31147 0.66 0.998352
Target:  5'- gGCgcg-GGGGCGGcGGUGCGGGgGCg- -3'
miRNA:   3'- -UGauaaUCCUGCU-UCACGCUUgCGaa -5'
5295 5' -48.8 NC_001798.1 + 20877 0.67 0.996627
Target:  5'- aGCUGgggAGGACGggGcGUcuGCGCUUc -3'
miRNA:   3'- -UGAUaa-UCCUGCuuCaCGcuUGCGAA- -5'
5295 5' -48.8 NC_001798.1 + 33500 0.67 0.996018
Target:  5'- ----gUGGGGCGggG-GCGAGgGCg- -3'
miRNA:   3'- ugauaAUCCUGCuuCaCGCUUgCGaa -5'
5295 5' -48.8 NC_001798.1 + 12715 0.67 0.996018
Target:  5'- gGCggcgGGGGCGuGGUGCG-GCGCg- -3'
miRNA:   3'- -UGauaaUCCUGCuUCACGCuUGCGaa -5'
5295 5' -48.8 NC_001798.1 + 52028 0.67 0.996018
Target:  5'- uGCUGUacuGGccCGggGUGCGcGCGCUc -3'
miRNA:   3'- -UGAUAau-CCu-GCuuCACGCuUGCGAa -5'
5295 5' -48.8 NC_001798.1 + 136136 0.67 0.99532
Target:  5'- gGCgugUGGGGCGAGG-GCGGGaGCUUu -3'
miRNA:   3'- -UGauaAUCCUGCUUCaCGCUUgCGAA- -5'
5295 5' -48.8 NC_001798.1 + 148443 0.67 0.994527
Target:  5'- ------cGGGCGuAAGUGCGggUGCa- -3'
miRNA:   3'- ugauaauCCUGC-UUCACGCuuGCGaa -5'
5295 5' -48.8 NC_001798.1 + 8889 0.69 0.983577
Target:  5'- cGCUGgcggAGGGCGGAG-GCGAAgGUg- -3'
miRNA:   3'- -UGAUaa--UCCUGCUUCaCGCUUgCGaa -5'
5295 5' -48.8 NC_001798.1 + 5842 0.74 0.85905
Target:  5'- uAUUAUUAGGGCaAAGUGCGAGCaCUg -3'
miRNA:   3'- -UGAUAAUCCUGcUUCACGCUUGcGAa -5'
5295 5' -48.8 NC_001798.1 + 150087 0.75 0.842233
Target:  5'- -----gGGGGCGAGGgGCGAGCGCg- -3'
miRNA:   3'- ugauaaUCCUGCUUCaCGCUUGCGaa -5'
5295 5' -48.8 NC_001798.1 + 5704 0.87 0.26818
Target:  5'- uAUUAUUAGGGCaAAGUGCGAGCGCUg -3'
miRNA:   3'- -UGAUAAUCCUGcUUCACGCUUGCGAa -5'
5295 5' -48.8 NC_001798.1 + 91729 0.88 0.23001
Target:  5'- uAUUAUUAGGACaAAGUGCGAACGCUUc -3'
miRNA:   3'- -UGAUAAUCCUGcUUCACGCUUGCGAA- -5'
5295 5' -48.8 NC_001798.1 + 22026 1.05 0.022768
Target:  5'- uACUAUUAGGACGAAGUGCGAACGCUUc -3'
miRNA:   3'- -UGAUAAUCCUGCUUCACGCUUGCGAA- -5'
5295 5' -48.8 NC_001798.1 + 21889 1.05 0.022768
Target:  5'- uACUAUUAGGACGAAGUGCGAACGCUUc -3'
miRNA:   3'- -UGAUAAUCCUGCUUCACGCUUGCGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.